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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.162332 (23 seq.)
>C191153679
CP037755
Bacteroidota
Pseudocnuella soli 17J28-1 [CP037755]
3589706
3589630
-
His
GTG
-
¡û
>W1810745587
QOWJ01000001
Bacteroidota
Paracnuella aquatica N24 [QOWJ]
39536
39612
+
His
GTG
[ENA]
¡û
>SRA1014722
SRR023845.282534
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
266
191
-
His
GTG
[SRA]
>SRA1015263
SRR023845.527493
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
186
111
-
His
GTG
[SRA]
>W2010439193
JAAATZ010000001
Bacteroidota
Flavobacterium sp. MK012 [JAAATZ]
76283
76208
-
His
GTG
[ENA]
¡û
>W2010468913
JAAGNZ010000002
Bacteroidota
Spirosoma agri KCTC 52727 [JAAGNZ]
81324
81249
-
His
GTG
[ENA]
¡û
>W2010490092
JAAJBT010000008
Bacteroidota
Flavobacterium sp. KDG-16 [JAAJBT]
70419
70494
+
His
GTG
[ENA]
¡û
>W2010595933
JABEVX010000002
Bacteroidota
Flavobacterium sp. IMCC34852 [JABEVX]
488006
487931
-
His
GTG
[ENA]
¡û
>W2011308517
QVMQ01000001
Bacteroidota
Dysgonomonas sp. 511 [QVMQ]
29815
29740
-
His
GTG
[ENA]
¡û
>W2110160674
JAAVIY010000001
Bacteroidota
Flavobacterium sp. D33 [JAAVIY]
601146
601071
-
His
GTG
[ENA]
¡û
>W2110239222
JACMIC010000007
Bacteroidota
Dysgonomonas sp. BGC7 [JACMIC]
82256
82331
+
His
GTG
[ENA]
¡û
>W2110262742
JACSXZ010000001
Bacteroidota
Flavobacterium piscinae KCTC 62513 [JACSXZ]
594557
594482
-
His
GTG
[ENA]
¡û
>W2110282933
JACWZY010000003
Bacteroidota
Spirosoma profusum BT702 [JACWZY]
168867
168792
-
His
GTG
[ENA]
¡û
>W2110283027
JACXAA010000006
Bacteroidota
Spirosoma validum BT704 [JACXAA]
212344
212419
+
His
GTG
[ENA]
¡û
>W2110303754
JADCLQ010000052
Bacteroidota
Dysgonomonas sp. GY75 [JADCLQ]
60128
60053
-
His
GTG
[ENA]
¡û
>W2110438257
JAEPKU010000155
Bacteroidota
Dysgonomonas sp. Marseille-P4677 [JAEPKU]
4278
4353
+
His
GTG
[ENA]
¡û
>C201295618
CP058306
Bacteroidota
Flavobacterium sp. I3-2 [CP058306]
2591040
2591115
+
His
GTG
-
¡û
>C201295620
CP058306
Bacteroidota
Flavobacterium sp. I3-2 [CP058306]
2591272
2591347
+
His
GTG
-
¡û
>C201295621
CP058306
Bacteroidota
Flavobacterium sp. I3-2 [CP058306]
2591389
2591464
+
His
GTG
-
¡û
>C211124460
CP059732
Bacteroidota
Spirosoma sp. PL0136 [CP059732]
7539780
7539705
-
His
GTG
-
¡û
>C231256975
CP089096
Bacteroidota
Flavobacterium channae KSM-R2A30 [CP089096]
1277417
1277492
+
His
GTG
-
¡û
>W1510650924
CVRP01000005
Bacteroidota
Dysgonomonas sp. BGC7 [CVRP]
82029
82103
+
His
GTG
[ENA]
¡û
>W1710549189
FOEI01000006
Bacteroidota
Flavobacterium urocaniciphilum [FOEI]
65379
65455
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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