This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.162346 (12 seq.)
>WENV170655375
JTFN01026489
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
408
332
-
Arg
CCT
[ENA]
¡û
>WENV170656385
JTFO01012021
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
1318
1394
+
Arg
CCT
[ENA]
¡û
>W1911585894
PIQG01000002
Gammaproteobacteria
Idiomarina taiwanensis PIT1 [PIQG]
188900
188976
+
Arg
CCT
[ENA]
¡û
>W1810609105
QGTT01000008
Gammaproteobacteria
Pseudidiomarina maritima 125B1 [QGTT]
70085
70009
-
Arg
CCT
[ENA]
¡û
>W1810721860
QNSG01000009
Gammaproteobacteria
Pseudidiomarina tainanensis 125Bg [QNSG]
27350
27426
+
Arg
CCT
[ENA]
¡û
>W1810758914
QPJA01000009
Gammaproteobacteria
Pseudidiomarina tainanensis 86_o [QPJA]
27350
27426
+
Arg
CCT
[ENA]
¡û
>W2011195287
PIQG01000002
Gammaproteobacteria
Idiomarina taiwanensis PIT1 [PIQG]
188900
188976
+
Arg
CCT
[ENA]
¡û
>W2011434432
RJLC01000010
Gammaproteobacteria
Idiomarina sp. ZQ330 [RJLC]
85032
84956
-
Arg
CCT
[ENA]
¡û
>W2012353448
WJRP01000002
Gammaproteobacteria
Idiomarina sp. FeN1w [WJRP]
303570
303646
+
Arg
CCT
[ENA]
¡û
>W2012353498
WJRQ01000001
Gammaproteobacteria
Idiomarina sp. FenA--70 [WJRQ]
303584
303660
+
Arg
CCT
[ENA]
¡û
>W2012353562
WJRR01000002
Gammaproteobacteria
Idiomarina sp. FenBw--71 [WJRR]
303541
303617
+
Arg
CCT
[ENA]
¡û
>C231135984
CP074112
Gammaproteobacteria
Idiomarina loihiensis SN11 [CP074112]
1669765
1669841
+
Arg
CCT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK