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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.162402 (34 seq.)
>W1711020967
LQYW01000157
Bacillota
Parageobacillus toebii [LQYW]
5260
5184
-
Arg
ACG
[ENA]
¡û
>W1711116934
LUCT01000029
Bacillota
Parageobacillus thermoglucosidasius thermoglucosidans [LUCT]
117
193
+
Arg
ACG
[ENA]
¡û
>W1711216403
LXMA01000041
Bacillota
Parageobacillus thermoglucosidasius thermoglucosidans [LXMA]
289
213
-
Arg
ACG
[ENA]
¡û
>W1711926547
NADQ01000023
Bacillota
Geobacillus sp. 44C [NADQ]
40433
40357
-
Arg
ACG
[ENA]
¡û
>C171053448
CP016916
Bacillota
Parageobacillus thermoglucosidasius TM242 [CP016916]
899233
899309
+
Arg
ACG
-
¡û
>C171053494
CP016916
Bacillota
Parageobacillus thermoglucosidasius TM242 [CP016916]
3127954
3127878
-
Arg
ACG
-
¡û
>C09106524
CP001638
Bacillota
Geobacillus sp. WCH70 [CP001638]
2143532
2143456
-
Arg
ACG
[Ensembl]
¡û
>W1910874494
NDYL01000002
Bacillota
Geobacillus galactosidasius DSM 18751 [NDYL]
713925
713849
-
Arg
ACG
[ENA]
¡û
>W1911411778
NWUZ01000001
Bacillota
Geobacillus sp. AYN2 [NWUZ]
2901062
2901138
+
Arg
ACG
[ENA]
¡û
>W1810530311
QCWL01000001
Bacillota
Geobacillus sp. LYN3 [QCWL]
2804330
2804406
+
Arg
ACG
[ENA]
¡û
>W1810779481
QQOJ01000001
Bacillota
Parageobacillus thermoglucosidasius DSM 2543 [QQOJ]
493567
493490
-
Arg
ACG
[ENA]
¡û
>W1810779707
QQOL01000015
Bacillota
Parageobacillus thermoglucosidasius DSM 21625 [QQOL]
474056
473979
-
Arg
ACG
[ENA]
¡û
>W1810789107
QREZ01000095
Bacillota
Parageobacillus toebii PW12 [QREZ]
341
417
+
Arg
ACG
[ENA]
¡û
>W2010723970
JACICZ010000028
Bacillota
Parageobacillus toebii NBRC 107807 DSM 14590 [JACICZ]
7981
7905
-
Arg
ACG
[ENA]
¡û
>W2010943197
NDYL01000002
Bacillota
Geobacillus galactosidasius DSM 18751 [NDYL]
713925
713849
-
Arg
ACG
[ENA]
¡û
>W2011138279
NWUZ01000001
Bacillota
Geobacillus sp. AYN2 [NWUZ]
2901062
2901138
+
Arg
ACG
[ENA]
¡û
>W2011404728
RCWX01000001
Bacillota
Parageobacillus toebii NBRC 107807 DSM 14590 [RCWX]
2958965
2958889
-
Arg
ACG
[ENA]
¡û
>W2011547185
SDLE01000064
Bacillota
Geobacillus sp. NFOSA3 [SDLE]
399
475
+
Arg
ACG
[ENA]
¡û
>W2012125168
VRMI01000187
Bacillota
Geobacillus sp. AYS3 [VRMI]
3181
3105
-
Arg
ACG
[ENA]
¡û
>C211147697
CP061475
Bacillota
Geobacillus sp. 44C [CP061475]
380968
380892
-
Arg
ACG
-
¡û
>C211277492
CP070511
Bacillota
Parageobacillus toebii NEB718 [CP070511]
1740795
1740871
+
Arg
ACG
-
¡û
>C231017903
AP025627
Bacillota
Parageobacillus sp. KH3-4 [AP025627]
1360716
1360792
+
Arg
ACG
-
¡û
>C231017920
AP025627
Bacillota
Parageobacillus sp. KH3-4 [AP025627]
3576404
3576328
-
Arg
ACG
-
¡û
>C231097039
CP063414
Bacillota
Parageobacillus thermoglucosidasius 23.6 [CP063414]
275047
275123
+
Arg
ACG
-
¡û
>C231097121
CP063414
Bacillota
Parageobacillus thermoglucosidasius 23.6 [CP063414]
2484031
2483955
-
Arg
ACG
-
¡û
>C231470638
CP103461
Bacillota
Geobacillus sp. CX412 [CP103461]
1209937
1210013
+
Arg
ACG
-
¡û
>C241058385
CP041632
Bacillota
Geobacillus sp. E263 [CP041632]
1306491
1306567
+
Arg
ACG
-
¡û
>C241136449
CP049703
Bacillota
Parageobacillus toebii NBRC 107807 DSM 14590 [CP049703]
2958965
2958889
-
Arg
ACG
-
¡û
>C241310676
CP133588
Bacillota
Parageobacillus toebii NEB857 [CP133588]
3249868
3249792
-
Arg
ACG
-
¡û
>W1610078128
BDAQ01000030
Bacillota
Parageobacillus toebii NBRC 107807 [BDAQ]
7886
7810
-
Arg
ACG
[ENA]
¡û
>W1610869255
LQYW01000157
Bacillota
Parageobacillus toebii [LQYW]
5260
5184
-
Arg
ACG
[ENA]
¡û
>W1610928293
LUCT01000029
Bacillota
Parageobacillus thermoglucosidasius thermoglucosidans [LUCT]
117
193
+
Arg
ACG
[ENA]
¡û
>W1611001311
LXMA01000041
Bacillota
Parageobacillus thermoglucosidasius thermoglucosidans [LXMA]
289
213
-
Arg
ACG
[ENA]
¡û
>W1710076687
BDAQ01000030
Bacillota
Parageobacillus toebii NBRC 107807 [BDAQ]
7886
7810
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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