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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.162442 (127 seq.)
>WENV180143369
OATX01026438
[OATX] human gut metagenome; faeces
109
36
-
Ile2
CAT
[ENA]
¡û
>WENV180205765
OBAH01095005
[OBAH] human gut metagenome; human gut
343
416
+
Ile2
CAT
[ENA]
¡û
>WENV180519154
OCHE01000434
[OCHE] human gut metagenome; human gut
29645
29718
+
Ile2
CAT
[ENA]
¡û
>WENV180525451
OCHI01000319
[OCHI] human gut metagenome; human gut
34511
34438
-
Ile2
CAT
[ENA]
¡û
>WENV180579963
OCMD01149048
[OCMD] human gut metagenome; human gut
216
143
-
Ile2
CAT
[ENA]
¡û
>WENV180606282
OCPT01009849
[OCPT] human gut metagenome; human gut
250
177
-
Ile2
CAT
[ENA]
¡û
>WENV180610950
OCPW01003082
[OCPW] human gut metagenome; human gut
3331
3258
-
Ile2
CAT
[ENA]
¡û
>WENV180612783
OCPX01004672
[OCPX] human gut metagenome; human gut
4681
4608
-
Ile2
CAT
[ENA]
¡û
>WENV180644994
OCSG01009416
[OCSG] human gut metagenome; human gut
156
83
-
Ile2
CAT
[ENA]
¡û
>WENV180905311
ODPF01011210
[ODPF] human metagenome; G_DNA_Stool
1932
1859
-
Ile2
CAT
[ENA]
¡û
>WENV181047343
ODXZ01000324
[ODXZ] human metagenome; G_DNA_Stool
27582
27509
-
Ile2
CAT
[ENA]
¡û
>WENV181349323
OFMN01050707
[OFMN] human gut metagenome; human gut
81
8
-
Ile2
CAT
[ENA]
¡û
>WENV181394537
OFRZ01000162
[OFRZ] human gut metagenome; human gut
11372
11445
+
Ile2
CAT
[ENA]
¡û
>WENV181428505
OGCV01003517
[OGCV] metagenome; Human gut stool
2047
1974
-
Ile2
CAT
[ENA]
¡û
>WENV181429689
OGCY01000131
[OGCY] metagenome; Human gut stool
25274
25201
-
Ile2
CAT
[ENA]
¡û
>WENV181567658
OGJJ01021851
[OGJJ] metagenome; Human gut stool
1125
1052
-
Ile2
CAT
[ENA]
¡û
>WENV181580595
OGKA01000138
[OGKA] metagenome; Human gut stool
51119
51192
+
Ile2
CAT
[ENA]
¡û
>WENV181718697
OGPT01039878
[OGPT] human gut metagenome; faeces
195
122
-
Ile2
CAT
[ENA]
¡û
>WENV181723948
OGPW01066138
[OGPW] human gut metagenome; faeces
314
387
+
Ile2
CAT
[ENA]
¡û
>WENV181793463
OGRR01002902
[OGRR] human gut metagenome; faeces
3512
3585
+
Ile2
CAT
[ENA]
¡û
>WENV181803866
OGSD01085709
[OGSD] human gut metagenome; faeces
262
335
+
Ile2
CAT
[ENA]
¡û
>WENV181823758
OGUJ01006584
[OGUJ] metagenome; Human gut stool
131
58
-
Ile2
CAT
[ENA]
¡û
>WENV181878102
OGXE01000959
[OGXE] human gut metagenome; faeces
4354
4281
-
Ile2
CAT
[ENA]
¡û
>WENV181907247
OGYA01000028
[OGYA] human gut metagenome; faeces
26815
26742
-
Ile2
CAT
[ENA]
¡û
>WENV181913589
OGYE01013166
[OGYE] human gut metagenome; faeces
952
879
-
Ile2
CAT
[ENA]
¡û
>WENV181921732
OGYK01000261
[OGYK] human gut metagenome; faeces
35748
35675
-
Ile2
CAT
[ENA]
¡û
>WENV181939122
OGYX01000318
[OGYX] human gut metagenome; faeces
34784
34711
-
Ile2
CAT
[ENA]
¡û
>WENV181947433
OGZD01004853
[OGZD] human gut metagenome; faeces
1698
1771
+
Ile2
CAT
[ENA]
¡û
>WENV181958209
OGZL01063480
[OGZL] human gut metagenome; faeces
117
44
-
Ile2
CAT
[ENA]
¡û
>WENV181963414
OGZP01026291
[OGZP] human gut metagenome; faeces
66
139
+
Ile2
CAT
[ENA]
¡û
>WENV181976175
OHAD01000430
[OHAD] human gut metagenome; faeces
36614
36541
-
Ile2
CAT
[ENA]
¡û
>WENV181992500
OHAQ01077859
[OHAQ] human gut metagenome; faeces
259
186
-
Ile2
CAT
[ENA]
¡û
>WENV182001160
OHAY01002209
[OHAY] human gut metagenome; faeces
5321
5248
-
Ile2
CAT
[ENA]
¡û
>WENV182092345
OHHG01031307
[OHHG] human gut metagenome; feces
158
231
+
Ile2
CAT
[ENA]
¡û
>WENV182125513
OHJS01009323
[OHJS] human gut metagenome; feces
1338
1411
+
Ile2
CAT
[ENA]
¡û
>WENV182164792
OHMN01002192
[OHMN] human gut metagenome; faeces
6007
5934
-
Ile2
CAT
[ENA]
¡û
>WENV182226274
OHRE01015125
[OHRE] human gut metagenome; feces
76
3
-
Ile2
CAT
[ENA]
¡û
>WENV182312418
OHXW01004996
[OHXW] human gut metagenome; feces
1918
1845
-
Ile2
CAT
[ENA]
¡û
>WENV182322940
OHYO01030186
[OHYO] human gut metagenome; feces
355
282
-
Ile2
CAT
[ENA]
¡û
>WENV182329470
OHZE01001510
[OHZE] human gut metagenome; feces
4477
4550
+
Ile2
CAT
[ENA]
¡û
>WENV182330510
OHZG01001738
[OHZG] human gut metagenome; feces
1370
1297
-
Ile2
CAT
[ENA]
¡û
>WENV182340773
OIAE01041771
[OIAE] human gut metagenome; feces
352
279
-
Ile2
CAT
[ENA]
¡û
>WENV182359497
OIBX01018086
[OIBX] human gut metagenome; feces
565
492
-
Ile2
CAT
[ENA]
¡û
>WENV182427518
OIHW01000091
[OIHW] human gut metagenome; human gut
4918
4991
+
Ile2
CAT
[ENA]
¡û
>WENV182429830
OIID01000514
[OIID] human gut metagenome; human gut
5063
5136
+
Ile2
CAT
[ENA]
¡û
>WENV182435934
OIJE01005578
[OIJE] human gut metagenome; human gut
1107
1034
-
Ile2
CAT
[ENA]
¡û
>WENV182444410
OIKS01009198
[OIKS] human gut metagenome; human gut
520
447
-
Ile2
CAT
[ENA]
¡û
>WENV182452598
OIME01012768
[OIME] human gut metagenome; human gut
530
457
-
Ile2
CAT
[ENA]
¡û
>WENV182457087
OINC01010113
[OINC] human gut metagenome; human gut
179
106
-
Ile2
CAT
[ENA]
¡û
>WENV182458135
OINH01006960
[OINH] human gut metagenome; human gut
1434
1361
-
Ile2
CAT
[ENA]
¡û
>WENV182464278
OIOH01006008
[OIOH] human gut metagenome; human gut
672
745
+
Ile2
CAT
[ENA]
¡û
>WENV182478658
OIQP01000712
[OIQP] human gut metagenome; human gut
4311
4384
+
Ile2
CAT
[ENA]
¡û
>WENV182481992
OIRD01000596
[OIRD] human gut metagenome; human gut
3159
3086
-
Ile2
CAT
[ENA]
¡û
>WENV182482268
OIRE01000147
[OIRE] human gut metagenome; human gut
1122
1195
+
Ile2
CAT
[ENA]
¡û
>WENV182483372
OIRI01000298
[OIRI] human gut metagenome; human gut
8057
7984
-
Ile2
CAT
[ENA]
¡û
>WENV182483698
OIRJ01000139
[OIRJ] human gut metagenome; human gut
28576
28503
-
Ile2
CAT
[ENA]
¡û
>WENV182489273
OISC01000554
[OISC] human gut metagenome; human gut
6805
6732
-
Ile2
CAT
[ENA]
¡û
>WENV182490031
OISE01001163
[OISE] human gut metagenome; human gut
2594
2521
-
Ile2
CAT
[ENA]
¡û
>WENV182499300
OITT01000111
[OITT] human gut metagenome; human gut
29681
29608
-
Ile2
CAT
[ENA]
¡û
>WENV182666442
OJNH01024033
[OJNH] human gut metagenome; feces
129
56
-
Ile2
CAT
[ENA]
¡û
>WENV182702517
OJOR01000176
[OJOR] human gut metagenome; stool sample
25737
25664
-
Ile2
CAT
[ENA]
¡û
>WENV182714310
OJPH01000197
[OJPH] human gut metagenome; stool sample
16461
16534
+
Ile2
CAT
[ENA]
¡û
>WENV182739195
OJQK01013982
[OJQK] human gut metagenome; stool sample
1086
1013
-
Ile2
CAT
[ENA]
¡û
>WENV182748988
OJQX01002424
[OJQX] human gut metagenome; stool sample
5843
5770
-
Ile2
CAT
[ENA]
¡û
>WENV182878026
OKRY01062613
[OKRY] human gut metagenome; faeces
214
141
-
Ile2
CAT
[ENA]
¡û
>WENV182886599
OKSD01000419
[OKSD] human gut metagenome; faeces
1363
1290
-
Ile2
CAT
[ENA]
¡û
>WENV182957764
OKWG01053315
[OKWG] human gut metagenome; human gut
94
21
-
Ile2
CAT
[ENA]
¡û
>WENV182977647
OKYF01000075
[OKYF] human gut metagenome; human gut
5756
5829
+
Ile2
CAT
[ENA]
¡û
>WENV182978481
OKYI01000191
[OKYI] human gut metagenome; human gut
4411
4484
+
Ile2
CAT
[ENA]
¡û
>WENV182981650
OKYY01000218
[OKYY] human gut metagenome; human gut
4851
4924
+
Ile2
CAT
[ENA]
¡û
>WENV182983866
OKZK01000091
[OKZK] human gut metagenome; human gut
34997
34924
-
Ile2
CAT
[ENA]
¡û
>WENV182984817
OKZN01000325
[OKZN] human gut metagenome; human gut
9195
9122
-
Ile2
CAT
[ENA]
¡û
>WENV182989641
OLAJ01007107
[OLAJ] human gut metagenome; human gut
1076
1149
+
Ile2
CAT
[ENA]
¡û
>WENV182991182
OLAO01026509
[OLAO] human gut metagenome; human gut
115
42
-
Ile2
CAT
[ENA]
¡û
>WENV182995251
OLBG01024764
[OLBG] human gut metagenome; human gut
497
570
+
Ile2
CAT
[ENA]
¡û
>WENV183002982
OLCQ01008657
[OLCQ] human gut metagenome; human gut
892
819
-
Ile2
CAT
[ENA]
¡û
>WENV183003306
OLCR01006560
[OLCR] human gut metagenome; human gut
371
444
+
Ile2
CAT
[ENA]
¡û
>WENV183009472
OLDR01000184
[OLDR] human gut metagenome; human gut
21214
21141
-
Ile2
CAT
[ENA]
¡û
>WENV183013178
OLEF01000360
[OLEF] human gut metagenome; human gut
3994
4067
+
Ile2
CAT
[ENA]
¡û
>WENV183138771
OLOH01019274
[OLOH] human gut metagenome; faeces
1444
1517
+
Ile2
CAT
[ENA]
¡û
>WENV183157004
OLOS01086178
[OLOS] human gut metagenome; faeces
273
200
-
Ile2
CAT
[ENA]
¡û
>WENV183189151
OLPQ01000644
[OLPQ] human gut metagenome; faeces
24710
24637
-
Ile2
CAT
[ENA]
¡û
>WENV183215655
OLQG01007364
[OLQG] human gut metagenome; faeces
1907
1834
-
Ile2
CAT
[ENA]
¡û
>WENV183230151
OLQT01000320
[OLQT] human gut metagenome; faeces
27138
27211
+
Ile2
CAT
[ENA]
¡û
>WENV183257395
OLRM01000246
[OLRM] human gut metagenome; faeces
16025
15952
-
Ile2
CAT
[ENA]
¡û
>WENV183260381
OLRP01000363
[OLRP] human gut metagenome; faeces
1164
1237
+
Ile2
CAT
[ENA]
¡û
>WENV183282152
OLSC01001003
[OLSC] human gut metagenome; faeces
27556
27483
-
Ile2
CAT
[ENA]
¡û
>WENV183292425
OLSJ01000951
[OLSJ] human gut metagenome; faeces
17293
17220
-
Ile2
CAT
[ENA]
¡û
>WENV183296921
OLSM01000463
[OLSM] human gut metagenome; faeces
7899
7972
+
Ile2
CAT
[ENA]
¡û
>WENV183327216
OLWA01000283
[OLWA] human gut metagenome; faeces
31565
31638
+
Ile2
CAT
[ENA]
¡û
>WENV183549726
OOAZ01009534
[OOAZ] human gut metagenome; human gut
597
670
+
Ile2
CAT
[ENA]
¡û
>WENV183553608
OOBK01019606
[OOBK] human gut metagenome; human gut
25
98
+
Ile2
CAT
[ENA]
¡û
>WENV183603269
OODK01001627
[OODK] human gut metagenome; human gut
3791
3864
+
Ile2
CAT
[ENA]
¡û
>WENV183772980
PPYF01024710
[PPYF] human gut metagenome; stool from patient with Crohn's disease
21033
21106
+
Ile2
CAT
[ENA]
¡û
>WENV183782146
PPYF01209903
[PPYF] human gut metagenome; stool from patient with Crohn's disease
4244
4171
-
Ile2
CAT
[ENA]
¡û
>W1910924758
NIHU01000024
Bacillota
[Ruminococcus] gnavus RJX1126 [NIHU]
36757
36684
-
Met
CAT
[ENA]
¡û
>W1910924799
NIHV01000012
Bacillota
[Ruminococcus] gnavus RJX1127 [NIHV]
87233
87306
+
Met
CAT
[ENA]
¡û
>W1810795547
QRLD01000004
Bacillota
Mediterraneibacter gnavus AM13-39 [QRLD]
130503
130576
+
Met
CAT
[ENA]
¡û
>W1810801159
QRPD01000005
Bacillota
Dorea formicigenerans AF36-1BH [QRPD]
166588
166661
+
Met
CAT
[ENA]
¡û
>W1810809311
QRWQ01000006
Bacillota
Mediterraneibacter gnavus AF19-16AC [QRWQ]
49288
49215
-
Met
CAT
[ENA]
¡û
>W1810875381
QUFX01000005
Bacillota
Blautia sp. AF22-5LB [QUFX]
38691
38764
+
Met
CAT
[ENA]
¡û
>W1810904827
QVEP01000073
Bacillota
Coprococcus catus AF45-17 [QVEP]
6055
5982
-
Met
CAT
[ENA]
¡û
>W2010476816
JAAIMT010000016
Bacillota
[Ruminococcus] gnavus MSK.23.91 [JAAIMT]
57010
56937
-
Ile2
CAT
[ENA]
¡û
>W2010482750
JAAIQZ010000016
Bacillota
[Ruminococcus] gnavus MSK.23.92 [JAAIQZ]
57010
56937
-
Ile2
CAT
[ENA]
¡û
>W2010482814
JAAIRA010000022
Bacillota
[Ruminococcus] gnavus MSK.23.82 [JAAIRA]
32930
32857
-
Ile2
CAT
[ENA]
¡û
>W2010482860
JAAIRB010000016
Bacillota
[Ruminococcus] gnavus MSK.23.81 [JAAIRB]
57010
56937
-
Ile2
CAT
[ENA]
¡û
>W2010483017
JAAIRE010000016
Bacillota
[Ruminococcus] gnavus MSK.23.62 [JAAIRE]
57010
56937
-
Ile2
CAT
[ENA]
¡û
>W2010483124
JAAIRG010000016
Bacillota
[Ruminococcus] gnavus MSK.23.60 [JAAIRG]
26294
26367
+
Ile2
CAT
[ENA]
¡û
>W2010483343
JAAIRK010000022
Bacillota
[Ruminococcus] gnavus MSK.23.43 [JAAIRK]
26296
26369
+
Ile2
CAT
[ENA]
¡û
>W2010483389
JAAIRL010000018
Bacillota
[Ruminococcus] gnavus MSK.23.41 [JAAIRL]
26296
26369
+
Ile2
CAT
[ENA]
¡û
>W2010483494
JAAIRN010000018
Bacillota
[Ruminococcus] gnavus MSK.22.24 [JAAIRN]
57010
56937
-
Ile2
CAT
[ENA]
¡û
>W2010484558
JAAISH010000007
Bacillota
[Eubacterium] rectale MSK.13.59 [JAAISH]
48020
47947
-
Ile2
CAT
[ENA]
¡û
>W2010484632
JAAISI010000010
Bacillota
[Eubacterium] rectale MSK.13.50 [JAAISI]
45234
45161
-
Ile2
CAT
[ENA]
¡û
>W2010484686
JAAISJ010000009
Bacillota
[Eubacterium] rectale MSK.13.48 [JAAISJ]
45193
45120
-
Ile2
CAT
[ENA]
¡û
>W2010484715
JAAISK010000002
Bacillota
[Eubacterium] rectale MSK.13.47 [JAAISK]
73551
73478
-
Ile2
CAT
[ENA]
¡û
>W2010970857
NIHU01000024
Bacillota
[Ruminococcus] gnavus RJX1126 [NIHU]
36757
36684
-
Ile2
CAT
[ENA]
¡û
>W2010970898
NIHV01000012
Bacillota
[Ruminococcus] gnavus RJX1127 [NIHV]
87233
87306
+
Ile2
CAT
[ENA]
¡û
>W2011670186
SPHT01000001
Bacillota
Dorea longicatena 1001175st1_H1 [SPHT]
20725
20652
-
Ile2
CAT
[ENA]
¡û
>W2110352562
JADNIC010000002
Bacillota
Coprococcus comes 1001271B_151109_E1 [JADNIC]
51128
51055
-
Ile2
CAT
[ENA]
¡û
>W2110718618
JAJBMF010000002
Bacillota
Mediterraneibacter faecis MSK.13.52 [JAJBMF]
48974
48901
-
Ile2
CAT
[ENA]
¡û
>W2110731566
JAJCOR010000004
Bacillota
Mediterraneibacter faecis DFI.1.31 [JAJCOR]
56719
56646
-
Ile2
CAT
[ENA]
¡û
>W2110733195
JAJCQW010000007
Bacillota
Mediterraneibacter faecis DFI.1.12 [JAJCQW]
56719
56646
-
Ile2
CAT
[ENA]
¡û
>W2110733552
JAJCRF010000007
Bacillota
Blautia obeum DFI.1.65 [JAJCRF]
147587
147660
+
Ile2
CAT
[ENA]
¡û
>C231186642
CP084014
Bacillota
[Ruminococcus] gnavus NBRC 114413 [CP084014]
743222
743149
-
Ile2
CAT
-
¡û
>W2310027464
BSQR01000036
Bacillota
[Ruminococcus] gnavus NBRC 114413 [BSQR]
8485
8412
-
Ile2
CAT
[ENA]
¡û
>W1610058307
BBZS01000033
Bacillota
Clostridia bacterium UC5.1-2D9 [BBZS]
4459
4532
+
Met
CAT
[ENA]
¡û
>W1710055066
BBZS01000033
Bacillota
Clostridia bacterium UC5.1-2D9 [BBZS]
4459
4532
+
Met
CAT
[ENA]
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Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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