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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.162445 (122 seq.)
>WENV180130671
OATG01000580
[OATG] human gut metagenome; faeces
18208
18132
-
Ile2
CAT
[ENA]
¡û
>WENV180224666
OBBK01009699
[OBBK] human gut metagenome; human gut
686
610
-
Ile2
CAT
[ENA]
¡û
>WENV180322747
OBKR01005615
[OBKR] human gut metagenome; feces
4907
4983
+
Ile2
CAT
[ENA]
¡û
>WENV180526705
OCHI01052925
[OCHI] human gut metagenome; human gut
637
713
+
Ile2
CAT
[ENA]
¡û
>WENV180563308
OCLC01012789
[OCLC] human gut metagenome; human gut
411
487
+
Ile2
CAT
[ENA]
¡û
>WENV180817342
ODJQ01000424
[ODJQ] human metagenome; G_DNA_Stool
32085
32161
+
Ile2
CAT
[ENA]
¡û
>WENV180849209
ODKV01000147
[ODKV] human metagenome; G_DNA_Stool
16055
15979
-
Ile2
CAT
[ENA]
¡û
>WENV180893512
ODMR01007405
[ODMR] human metagenome; G_DNA_Stool
3519
3595
+
Ile2
CAT
[ENA]
¡û
>WENV181428654
OGCW01000033
[OGCW] metagenome; Human gut stool
30634
30710
+
Ile2
CAT
[ENA]
¡û
>WENV181449465
OGDX01000307
[OGDX] metagenome; Human gut stool
30170
30246
+
Ile2
CAT
[ENA]
¡û
>WENV181452554
OGEA01001044
[OGEA] metagenome; Human gut stool
1393
1469
+
Ile2
CAT
[ENA]
¡û
>WENV181454085
OGEC01007745
[OGEC] metagenome; Human gut stool
1042
1118
+
Ile2
CAT
[ENA]
¡û
>WENV181455631
OGEG01000004
[OGEG] metagenome; Human gut stool
24384
24308
-
Ile2
CAT
[ENA]
¡û
>WENV181464396
OGEP01000748
[OGEP] metagenome; Human gut stool
23737
23813
+
Ile2
CAT
[ENA]
¡û
>WENV181464416
OGEP01000797
[OGEP] metagenome; Human gut stool
19862
19786
-
Ile2
CAT
[ENA]
¡û
>WENV181472389
OGEZ01000937
[OGEZ] metagenome; Human gut stool
2061
1985
-
Ile2
CAT
[ENA]
¡û
>WENV181481830
OGFJ01000081
[OGFJ] metagenome; Human gut stool
17345
17421
+
Ile2
CAT
[ENA]
¡û
>WENV181482988
OGFK01000225
[OGFK] metagenome; Human gut stool
24335
24259
-
Ile2
CAT
[ENA]
¡û
>WENV181491275
OGFX01014002
[OGFX] metagenome; Human gut stool
667
591
-
Ile2
CAT
[ENA]
¡û
>WENV181497223
OGGE01000371
[OGGE] metagenome; Human gut stool
7692
7616
-
Ile2
CAT
[ENA]
¡û
>WENV181500195
OGGH01000214
[OGGH] metagenome; Human gut stool
24338
24262
-
Ile2
CAT
[ENA]
¡û
>WENV181502758
OGGJ01000046
[OGGJ] metagenome; Human gut stool
24337
24261
-
Ile2
CAT
[ENA]
¡û
>WENV181505588
OGGK01040562
[OGGK] metagenome; Human gut stool
450
374
-
Ile2
CAT
[ENA]
¡û
>WENV181506865
OGGO01000103
[OGGO] metagenome; Human gut stool
30412
30488
+
Ile2
CAT
[ENA]
¡û
>WENV181511131
OGGS01000355
[OGGS] metagenome; Human gut stool
30291
30367
+
Ile2
CAT
[ENA]
¡û
>WENV181518204
OGHA01002863
[OGHA] metagenome; Human gut stool
4948
5024
+
Ile2
CAT
[ENA]
¡û
>WENV181520063
OGHC01024724
[OGHC] metagenome; Human gut stool
253
177
-
Ile2
CAT
[ENA]
¡û
>WENV181525311
OGHJ01000146
[OGHJ] metagenome; Human gut stool
52321
52245
-
Ile2
CAT
[ENA]
¡û
>WENV181529102
OGHL01022938
[OGHL] metagenome; Human gut stool
766
690
-
Ile2
CAT
[ENA]
¡û
>WENV181536974
OGHW01001321
[OGHW] metagenome; Human gut stool
20459
20535
+
Ile2
CAT
[ENA]
¡û
>WENV181541925
OGIE01000195
[OGIE] metagenome; Human gut stool
35889
35965
+
Ile2
CAT
[ENA]
¡û
>WENV181546448
OGII01000131
[OGII] metagenome; Human gut stool
52283
52207
-
Ile2
CAT
[ENA]
¡û
>WENV181557274
OGIV01006596
[OGIV] metagenome; Human gut stool
2070
1994
-
Ile2
CAT
[ENA]
¡û
>WENV181562868
OGJG01000184
[OGJG] metagenome; Human gut stool
27638
27714
+
Ile2
CAT
[ENA]
¡û
>WENV181572577
OGJQ01016259
[OGJQ] metagenome; Human gut stool
866
790
-
Ile2
CAT
[ENA]
¡û
>WENV181574855
OGJU01000041
[OGJU] metagenome; Human gut stool
91859
91935
+
Ile2
CAT
[ENA]
¡û
>WENV181583619
OGKD01007939
[OGKD] metagenome; Human gut stool
2015
2091
+
Ile2
CAT
[ENA]
¡û
>WENV181585672
OGKF01027227
[OGKF] metagenome; Human gut stool
404
480
+
Ile2
CAT
[ENA]
¡û
>WENV181609336
OGLN01018348
[OGLN] metagenome; Human gut stool
1571
1647
+
Ile2
CAT
[ENA]
¡û
>WENV181629258
OGMP01000359
[OGMP] metagenome; Human gut stool
25374
25297
-
Ile2
CAT
[ENA]
¡û
>WENV181639245
OGND01000240
[OGND] metagenome; Human gut stool
16444
16368
-
Ile2
CAT
[ENA]
¡û
>WENV181645057
OGNM01013285
[OGNM] metagenome; Human gut stool
294
370
+
Ile2
CAT
[ENA]
¡û
>WENV181646087
OGNO01000202
[OGNO] metagenome; Human gut stool
30256
30332
+
Ile2
CAT
[ENA]
¡û
>WENV181647213
OGNP01003583
[OGNP] metagenome; Human gut stool
913
837
-
Ile2
CAT
[ENA]
¡û
>WENV181650406
OGNU01001584
[OGNU] metagenome; Human gut stool
4805
4729
-
Ile2
CAT
[ENA]
¡û
>WENV181650793
OGNV01000033
[OGNV] metagenome; Human gut stool
107175
107099
-
Ile2
CAT
[ENA]
¡û
>WENV181651884
OGNW01000093
[OGNW] metagenome; Human gut stool
52282
52206
-
Ile2
CAT
[ENA]
¡û
>WENV181747895
OGQO01000226
[OGQO] human gut metagenome; faeces
20464
20540
+
Ile2
CAT
[ENA]
¡û
>WENV181859754
OGWQ01008092
[OGWQ] human gut metagenome; faeces
1696
1620
-
Ile2
CAT
[ENA]
¡û
>WENV181885691
OGXJ01071526
[OGXJ] human gut metagenome; faeces
357
433
+
Ile2
CAT
[ENA]
¡û
>WENV181886007
OGXK01002699
[OGXK] human gut metagenome; faeces
8049
7973
-
Ile2
CAT
[ENA]
¡û
>WENV181894211
OGXQ01038843
[OGXQ] human gut metagenome; faeces
26
102
+
Ile2
CAT
[ENA]
¡û
>WENV181989174
OHAO01003953
[OHAO] human gut metagenome; faeces
7676
7600
-
Ile2
CAT
[ENA]
¡û
>WENV182041572
OHDI01009999
[OHDI] human gut metagenome; feces
54
130
+
Ile2
CAT
[ENA]
¡û
>WENV182057574
OHEO01037860
[OHEO] human gut metagenome; feces
319
395
+
Ile2
CAT
[ENA]
¡û
>WENV182174166
OHNE01014114
[OHNE] human gut metagenome; feces
152
76
-
Ile2
CAT
[ENA]
¡û
>WENV182204246
OHPQ01007363
[OHPQ] human gut metagenome; feces
726
802
+
Ile2
CAT
[ENA]
¡û
>WENV182233755
OHRQ01009157
[OHRQ] human gut metagenome; feces
1216
1292
+
Ile2
CAT
[ENA]
¡û
>WENV182262748
OHTN01009201
[OHTN] human gut metagenome; feces
573
649
+
Ile2
CAT
[ENA]
¡û
>WENV182434191
OIIX01000146
[OIIX] human gut metagenome; human gut
20887
20811
-
Ile2
CAT
[ENA]
¡û
>WENV182434519
OIIY01000555
[OIIY] human gut metagenome; human gut
5840
5916
+
Ile2
CAT
[ENA]
¡û
>WENV182436458
OIJG01000943
[OIJG] human gut metagenome; human gut
2195
2271
+
Ile2
CAT
[ENA]
¡û
>WENV182440169
OIJX01003762
[OIJX] human gut metagenome; human gut
1120
1044
-
Ile2
CAT
[ENA]
¡û
>WENV182444613
OIKT01000319
[OIKT] human gut metagenome; human gut
6523
6599
+
Ile2
CAT
[ENA]
¡û
>WENV182448053
OILI01000657
[OILI] human gut metagenome; human gut
4510
4586
+
Ile2
CAT
[ENA]
¡û
>WENV182450592
OILX01000171
[OILX] human gut metagenome; human gut
2682
2758
+
Ile2
CAT
[ENA]
¡û
>WENV182462880
OIOA01000533
[OIOA] human gut metagenome; human gut
2263
2187
-
Ile2
CAT
[ENA]
¡û
>WENV182465281
OIOM01000572
[OIOM] human gut metagenome; human gut
2247
2323
+
Ile2
CAT
[ENA]
¡û
>WENV182600081
OJJF01007376
[OJJF] metagenome; faeces
292
216
-
Ile2
CAT
[ENA]
¡û
>WENV182648211
OJME01063712
[OJME] human gut metagenome; feces
432
356
-
Ile2
CAT
[ENA]
¡û
>WENV182652010
OJMH01006455
[OJMH] human gut metagenome; feces
3656
3580
-
Ile2
CAT
[ENA]
¡û
>WENV182653935
OJMI01001103
[OJMI] human gut metagenome; feces
11007
10931
-
Ile2
CAT
[ENA]
¡û
>WENV182676137
OJNQ01048985
[OJNQ] human gut metagenome; feces
272
348
+
Ile2
CAT
[ENA]
¡û
>WENV182677594
OJNR01058617
[OJNR] human gut metagenome; human gut
589
513
-
Ile2
CAT
[ENA]
¡û
>WENV182680702
OJNU01004864
[OJNU] human gut metagenome; human gut
1440
1516
+
Ile2
CAT
[ENA]
¡û
>WENV182696270
OJOK01002358
[OJOK] human gut metagenome; human gut
4229
4153
-
Ile2
CAT
[ENA]
¡û
>WENV182957115
OKWG01001162
[OKWG] human gut metagenome; human gut
1622
1546
-
Ile2
CAT
[ENA]
¡û
>WENV182959561
OKWJ01000241
[OKWJ] human gut metagenome; human gut
71562
71486
-
Ile2
CAT
[ENA]
¡û
>WENV182993691
OLBA01000237
[OLBA] human gut metagenome; human gut
5518
5442
-
Ile2
CAT
[ENA]
¡û
>WENV182994316
OLBC01000843
[OLBC] human gut metagenome; human gut
3898
3822
-
Ile2
CAT
[ENA]
¡û
>WENV183000140
OLCD01000145
[OLCD] human gut metagenome; human gut
4173
4097
-
Ile2
CAT
[ENA]
¡û
>WENV183000859
OLCH01004505
[OLCH] human gut metagenome; human gut
86
10
-
Ile2
CAT
[ENA]
¡û
>WENV183001028
OLCI01000456
[OLCI] human gut metagenome; human gut
4600
4524
-
Ile2
CAT
[ENA]
¡û
>WENV183005075
OLCY01000259
[OLCY] human gut metagenome; human gut
12117
12041
-
Ile2
CAT
[ENA]
¡û
>WENV183076279
OLIW01002453
[OLIW] human gut metagenome; feces
13415
13339
-
Ile2
CAT
[ENA]
¡û
>WENV183079668
OLIX01051574
[OLIX] human gut metagenome; feces
497
573
+
Ile2
CAT
[ENA]
¡û
>WENV183304291
OLSQ01026985
[OLSQ] human gut metagenome; faeces
36
112
+
Ile2
CAT
[ENA]
¡û
>WENV183341134
OLWM01000656
[OLWM] human gut metagenome; feces
11337
11261
-
Ile2
CAT
[ENA]
¡û
>WENV183351374
OLWY01008749
[OLWY] human gut metagenome; feces
1826
1750
-
Ile2
CAT
[ENA]
¡û
>WENV183352950
OLXA01002791
[OLXA] human gut metagenome; feces
4469
4393
-
Ile2
CAT
[ENA]
¡û
>WENV183360899
OLXJ01000575
[OLXJ] human gut metagenome; feces
16989
16913
-
Ile2
CAT
[ENA]
¡û
>WENV183392399
OLZE01004364
[OLZE] human gut metagenome; feces
4026
4102
+
Ile2
CAT
[ENA]
¡û
>WENV183400535
OLZR01015339
[OLZR] human gut metagenome; feces
1121
1197
+
Ile2
CAT
[ENA]
¡û
>WENV183402131
OLZU01008646
[OLZU] human gut metagenome; feces
1021
945
-
Ile2
CAT
[ENA]
¡û
>WENV183425356
OMBK01006592
[OMBK] human gut metagenome; feces
1754
1830
+
Ile2
CAT
[ENA]
¡û
>WENV183469578
OMEI01032459
[OMEI] human gut metagenome; feces
183
259
+
Ile2
CAT
[ENA]
¡û
>WENV183497362
OMGN01002022
[OMGN] human gut metagenome; feces
9711
9635
-
Ile2
CAT
[ENA]
¡û
>WENV183499657
OMGQ01000116
[OMGQ] human gut metagenome; human gut
47400
47476
+
Ile2
CAT
[ENA]
¡û
>WENV183506438
OMGY01000850
[OMGY] human gut metagenome; human gut
3682
3758
+
Ile2
CAT
[ENA]
¡û
>WENV183528877
ONZX01012249
[ONZX] human gut metagenome; human gut
1455
1531
+
Ile2
CAT
[ENA]
¡û
>WENV183531723
OOAC01004115
[OOAC] human gut metagenome; human gut
730
806
+
Ile2
CAT
[ENA]
¡û
>WENV183535736
OOAG01000136
[OOAG] human gut metagenome; human gut
24359
24283
-
Ile2
CAT
[ENA]
¡û
>WENV183540194
OOAJ01004370
[OOAJ] human gut metagenome; human gut
1436
1512
+
Ile2
CAT
[ENA]
¡û
>WENV183546694
OOAU01000001
[OOAU] human gut metagenome; human gut
24382
24306
-
Ile2
CAT
[ENA]
¡û
>WENV183549980
OOBB01000025
[OOBB] human gut metagenome; human gut
70003
69927
-
Ile2
CAT
[ENA]
¡û
>WENV183552512
OOBJ01008989
[OOBJ] human gut metagenome; human gut
2376
2300
-
Ile2
CAT
[ENA]
¡û
>WENV183560032
OOBT01003791
[OOBT] human gut metagenome; human gut
3521
3445
-
Ile2
CAT
[ENA]
¡û
>WENV183563871
OOBY01000041
[OOBY] human gut metagenome; human gut
68360
68284
-
Ile2
CAT
[ENA]
¡û
>WENV183564690
OOBZ01000145
[OOBZ] human gut metagenome; human gut
27478
27402
-
Ile2
CAT
[ENA]
¡û
>WENV183566981
OOCB01000100
[OOCB] human gut metagenome; human gut
80278
80354
+
Ile2
CAT
[ENA]
¡û
>WENV183576426
OOCJ01000059
[OOCJ] human gut metagenome; human gut
36951
37027
+
Ile2
CAT
[ENA]
¡û
>WENV183592230
OOCZ01000034
[OOCZ] human gut metagenome; human gut
76381
76305
-
Ile2
CAT
[ENA]
¡û
>WENV183603446
OODK01005812
[OODK] human gut metagenome; human gut
1313
1389
+
Ile2
CAT
[ENA]
¡û
>WENV183606498
OODN01009154
[OODN] human gut metagenome; human gut
772
848
+
Ile2
CAT
[ENA]
¡û
>WENV183631831
OOIF01000259
[OOIF] human gut metagenome; human gut
24338
24262
-
Ile2
CAT
[ENA]
¡û
>WENV183633666
OOIG01001728
[OOIG] human gut metagenome; human gut
15682
15758
+
Ile2
CAT
[ENA]
¡û
>WENV183767375
PPYE01366955
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
2186
2110
-
Ile2
CAT
[ENA]
¡û
>WENV170085661
CEAB01058515
[CEAB] gut metagenome; human stools
52511
52435
-
Met
CAT
[ENA]
¡û
>WENV170086518
CEAC01010953
[CEAC] gut metagenome; human stools
37636
37712
+
Met
CAT
[ENA]
¡û
>WENV170106183
CEBV01038384
[CEBV] gut metagenome; human stools
52770
52694
-
Met
CAT
[ENA]
¡û
>W1810796543
QRLV01000003
Betaproteobacteria
Sutterella sp. AM11-39 [QRLV]
118823
118747
-
Met
CAT
[ENA]
¡û
>W2010258927
CABJEA020000003
Betaproteobacteria
Sutterellaceae bacterium [CABJEA]
118823
118747
-
Ile2
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK