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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.162458 (96 seq.)
>W131016725
AISM01000009
Bacillota
Enterococcus hirae 2006-70-121 [AISM]
143852
143927
+
Met
CAT
[ENA]
¡û
>W131018355
AITW01000018
Bacillota
Enterococcus faecium HF50215 [AITW]
70567
70642
+
Met
CAT
[ENA]
¡û
>W131027423
AJAI01000013
Bacillota
Enterococcus hirae ATCC 9790 [AJAI]
45558
45483
-
Met
CAT
[ENA]
¡û
>W1711179009
LWHF01000084
Bacillota
Enterococcus faecium [LWHF]
67594
67521
-
Met
CAT
[ENA]
¡û
>W131201248
ASVZ01000001
Bacillota
Enterococcus hirae ATCC 9790 [ASVZ]
900998
901073
+
Met
CAT
[ENA]
¡û
>W1711350273
MCRG01000006
Bacillota
Enterococcus mundtii [MCRG]
45745
45672
-
Met
CAT
[ENA]
¡û
>W1711459395
MJDN01000015
Bacillota
Enterococcus hirae [MJDN]
14854
14929
+
Met
CAT
[ENA]
¡û
>W1711459409
MJDO01000020
Bacillota
Enterococcus hirae [MJDO]
14854
14929
+
Met
CAT
[ENA]
¡û
>W1711459606
MJDR01000005
Bacillota
Enterococcus hirae [MJDR]
234018
234093
+
Met
CAT
[ENA]
¡û
>W1711459735
MJDT01000180
Bacillota
Enterococcus hirae [MJDT]
1882
1807
-
Met
CAT
[ENA]
¡û
>W1711459756
MJDU01000003
Bacillota
Enterococcus hirae [MJDU]
211668
211743
+
Met
CAT
[ENA]
¡û
>W1711459816
MJDV01000001
Bacillota
Enterococcus hirae [MJDV]
334288
334363
+
Met
CAT
[ENA]
¡û
>W1711460113
MJEA01000001
Bacillota
Enterococcus villorum [MJEA]
287136
287063
-
Met
CAT
[ENA]
¡û
>W1711460176
MJEB01000004
Bacillota
Enterococcus villorum [MJEB]
96926
96853
-
Met
CAT
[ENA]
¡û
>W1712068594
NGLT01000001
Bacillota
Enterococcus faecium [NGLT]
902391
902316
-
Met
CAT
[ENA]
¡û
>W1712069686
NGMO01000001
Bacillota
Enterococcus sp. 10A9_DIV0425 [NGMO]
179677
179601
-
Met
CAT
[ENA]
¡û
>W131009059
AHXK01000003
Bacillota
Enterococcus faecium E1630 [AHXK]
205718
205645
-
Met
CAT
[ENA]
¡û
>W131009375
AHXR01000005
Bacillota
Enterococcus faecium E1972 [AHXR]
68480
68553
+
Met
CAT
[ENA]
¡û
>W131009377
AHXR01000005
Bacillota
Enterococcus faecium E1972 [AHXR]
197430
197503
+
Met
CAT
[ENA]
¡û
>W131016201
AISC01000008
Bacillota
Enterococcus faecalis UAA769 [AISC]
83
156
+
Met
CAT
[ENA]
¡û
>W131202062
ASWM01000005
Bacillota
Enterococcus durans ATCC 6056 [ASWM]
266196
266269
+
Met
CAT
[ENA]
¡û
>W131202064
ASWM01000005
Bacillota
Enterococcus durans ATCC 6056 [ASWM]
558461
558537
+
Met
CAT
[ENA]
¡û
>W131017340
AITA01000023
Bacillota
Enterococcus faecium 9731349-1 [AITA]
107879
107955
+
Met
CAT
[ENA]
¡û
>W131027708
AJAN01000028
Bacillota
Enterococcus villorum ATCC 700913 [AJAN]
14976
14903
-
Met
CAT
[ENA]
¡û
>W131201703
ASWG01000002
Bacillota
Enterococcus villorum ATCC 700913 [ASWG]
351965
352038
+
Met
CAT
[ENA]
¡û
>WENV180129590
OATD01000204
[OATD] human gut metagenome; faeces
221
294
+
Ile2
CAT
[ENA]
¢þ
>WENV180335115
OBLF01174822
[OBLF] metagenome; feces
76
3
-
Ile2
CAT
[ENA]
¢þ
>WENV181327490
OFLQ01000110
[OFLQ] metagenome; faeces
21698
21771
+
Ile2
CAT
[ENA]
¢þ
>WENV181811397
OGSY01001505
[OGSY] human gut metagenome; fecal sample 5 from infant 8
2032
1957
-
Ile2
CAT
[ENA]
¢þ
>W141383561
JDFT01000004
Bacillota
Enterococcus mundtii CRL35 [JDFT]
45276
45203
-
Met
CAT
[ENA]
¡û
>C181074962
CP023011
Bacillota
Enterococcus hirae FDAARGOS_234 [CP023011]
1958317
1958392
+
Met
CAT
-
¡û
>C191062475
CP028928
Bacillota
Lactobacillus sp. Koumiss [CP028928]
1345123
1345196
+
Met
CAT
-
¡û
>C191204845
LR134297
Bacillota
Enterococcus hirae NCTC12368 [LR134297]
1335459
1335534
+
Met
CAT
-
¡û
>C191216310
LR135324
Bacillota
Enterococcus faecium [LR135324]
2214528
2214455
-
Met
CAT
-
¡û
>W141699598
JMIG01000002
Bacillota
Enterococcus hirae [JMIG]
229123
229048
-
Met
CAT
[ENA]
¡û
>W1910280345
FQST01000059
Bacillota
Enterococcus faecium [FQST]
2368
2295
-
Met
CAT
[ENA]
¡û
>W1910283443
FREA01000008
Bacillota
Enterococcus faecium [FREA]
44306
44379
+
Met
CAT
[ENA]
¡û
>W1910283477
FREA01000042
Bacillota
Enterococcus faecium [FREA]
3073
3146
+
Met
CAT
[ENA]
¡û
>W1910283950
FREG01000042
Bacillota
Enterococcus faecium [FREG]
4103
4176
+
Met
CAT
[ENA]
¡û
>W1910313059
FRYF01000059
Bacillota
Enterococcus faecium [FRYF]
2368
2295
-
Met
CAT
[ENA]
¡û
>W1910607610
LEQJ01000023
Bacillota
Enterococcus faecium 131EA1 [LEQJ]
20985
20909
-
Met
CAT
[ENA]
¡û
>W1910607631
LEQJ01000025
Bacillota
Enterococcus faecium 131EA1 [LEQJ]
26612
26688
+
Met
CAT
[ENA]
¡û
>W1910608953
LERI01000018
Bacillota
Enterococcus faecium 316EA1 [LERI]
20712
20637
-
Met
CAT
[ENA]
¡û
>W1910609063
LERL01000007
Bacillota
Enterococcus faecium 46EA1 [LERL]
736069
735996
-
Met
CAT
[ENA]
¡û
>W1910609547
LERT01000007
Bacillota
Enterococcus faecium 79EA1 [LERT]
148129
148056
-
Met
CAT
[ENA]
¡û
>W1910609761
LERW01000015
Bacillota
Enterococcus faecium 87EA1 [LERW]
80483
80407
-
Met
CAT
[ENA]
¡û
>W1910609791
LERX01000003
Bacillota
Enterococcus faecium 8EA1 [LERX]
216233
216306
+
Met
CAT
[ENA]
¡û
>W1910609861
LERY01000010
Bacillota
Enterococcus faecium 92EA1 [LERY]
46658
46734
+
Met
CAT
[ENA]
¡û
>W1910609967
LESA01000004
Bacillota
Enterococcus hirae 104EA1 [LESA]
288306
288381
+
Met
CAT
[ENA]
¡û
>W1910610001
LESB01000002
Bacillota
Enterococcus hirae 10AEA1 [LESB]
354782
354857
+
Met
CAT
[ENA]
¡û
>W1910610074
LESC01000003
Bacillota
Enterococcus hirae 126EA1 [LESC]
34932
34857
-
Met
CAT
[ENA]
¡û
>W1910610114
LESD01000005
Bacillota
Enterococcus hirae 175EA1 [LESD]
14126
14201
+
Met
CAT
[ENA]
¡û
>W1910610193
LESE01000007
Bacillota
Enterococcus hirae 186EA1 [LESE]
292584
292659
+
Met
CAT
[ENA]
¡û
>W1910610233
LESF01000001
Bacillota
Enterococcus hirae 260AEA1 [LESF]
902422
902497
+
Met
CAT
[ENA]
¡û
>W1910610290
LESG01000001
Bacillota
Enterococcus hirae 269EA1 [LESG]
305249
305324
+
Met
CAT
[ENA]
¡û
>W1910610369
LESH01000003
Bacillota
Enterococcus hirae 321EA1 [LESH]
45781
45706
-
Met
CAT
[ENA]
¡û
>W1910610405
LESI01000001
Bacillota
Enterococcus hirae 41EA1 [LESI]
334562
334637
+
Met
CAT
[ENA]
¡û
>W1910610477
LESJ01000004
Bacillota
Enterococcus hirae 88EA1 [LESJ]
38836
38761
-
Met
CAT
[ENA]
¡û
>W1911085748
NNSV01000012
Bacillota
Enterococcus hirae AAK_VMS5 [NNSV]
414688
414613
-
Met
CAT
[ENA]
¡û
>W1911238934
NSDC01000040
Bacillota
Enterococcus hirae 1013 [NSDC]
144344
144419
+
Met
CAT
[ENA]
¡û
>W1911239002
NSDD01000086
Bacillota
Enterococcus hirae 1725 [NSDD]
12263
12338
+
Met
CAT
[ENA]
¡û
>W1911436947
NXPE01000025
Bacillota
Enterococcus faecium 7_Efcm_HA-NL [NXPE]
1116
1189
+
Met
CAT
[ENA]
¡û
>W1911590347
PJWY01000001
Bacillota
Enterococcus faecalis EN412 [PJWY]
622536
622463
-
Met
CAT
[ENA]
¡û
>W1911590944
PJXJ01000001
Bacillota
Enterococcus faecalis EN215 [PJXJ]
622536
622463
-
Met
CAT
[ENA]
¡û
>W1911712964
QPUA01000026
Bacillota
Enterococcus faecium VV11 [QPUA]
268
343
+
Met
CAT
[ENA]
¡û
>W1810047479
PCFX01000043
Bacillota
Enterococcus faecium Hp_23-9 [PCFX]
4103
4176
+
Met
CAT
[ENA]
¡û
>W1810311040
PTUH01000004
Bacillota
Enterococcus faecium CVM N60061F [PTUH]
2975
2902
-
Met
CAT
[ENA]
¡û
>W1810311803
PTUV01000027
Bacillota
Enterococcus faecium CVM N60048F [PTUV]
17767
17694
-
Met
CAT
[ENA]
¡û
>W1810312005
PTUZ01000004
Bacillota
Enterococcus faecium CVM N59998F [PTUZ]
2382
2306
-
Met
CAT
[ENA]
¡û
>W1810314309
PTWP01000205
Bacillota
Enterococcus faecium CVM N59517F [PTWP]
36215
36291
+
Met
CAT
[ENA]
¡û
>W1810315278
PTXH01000049
Bacillota
Enterococcus faecium CVM N59435F [PTXH]
42975
43048
+
Met
CAT
[ENA]
¡û
>W1810316090
PTXZ01000152
Bacillota
Enterococcus faecium CVM N52732 [PTXZ]
6808
6881
+
Met
CAT
[ENA]
¡û
>W1810316094
PTXZ01000188
Bacillota
Enterococcus faecium CVM N52732 [PTXZ]
3140
3067
-
Met
CAT
[ENA]
¡û
>W1810316348
PTYE01000071
Bacillota
Enterococcus faecalis CVM N52773 [PTYE]
34128
34201
+
Met
CAT
[ENA]
¡û
>W1810317593
PTZC01000006
Bacillota
Enterococcus faecium CVM N53804 [PTZC]
43389
43462
+
Met
CAT
[ENA]
¡û
>W1810320195
PUAY01000018
Bacillota
Enterococcus faecium CVM N55655 [PUAY]
45337
45410
+
Met
CAT
[ENA]
¡û
>W1810321070
PUBN01000072
Bacillota
Enterococcus faecium CVM N52636 [PUBN]
976
1052
+
Met
CAT
[ENA]
¡û
>W1810586784
QFFP01000003
Bacillota
Enterococcus hirae HPCN4 [QFFP]
207853
207778
-
Met
CAT
[ENA]
¡û
>W1810814788
QSAN01000119
Bacillota
Enterococcus durans AF11-32-H [QSAN]
2408
2335
-
Met
CAT
[ENA]
¡û
>W1830005206
PSQK01000002
Bacillota
Enterococcus hirae UPM01 [PSQK]
20209
20134
-
Ile2
CAT
[ENA]
¡û
>W1830005207
PSQL01000002
Bacillota
Enterococcus hirae UPM02 [PSQL]
20209
20134
-
Ile2
CAT
[ENA]
¡û
>C151008799
CP006030
Bacillota
Enterococcus faecium T110 [CP006030]
1946707
1946631
-
Met
CAT
[Ensembl]
¡û
>W1511346210
JRGY01000020
Bacillota
Enterococcus faecium L-X [JRGY]
5250
5174
-
Met
CAT
[ENA]
¡û
>W1511356492
JRUH01000047
Bacillota
Enterococcus hirae 70-61-3 [JRUH]
294424
294499
+
Met
CAT
[ENA]
¡û
>W1511694087
LGAO01000046
Bacillota
Enterococcus hirae 19m [LGAO]
500781
500856
+
Met
CAT
[ENA]
¡û
>C121013952
CP003504
Bacillota
Enterococcus hirae ATCC 9790 [CP003504]
2200840
2200915
+
Met
CAT
-
¡û
>C161089240
CP015516
Bacillota
Enterococcus hirae R17 [CP015516]
1502015
1501940
-
Met
CAT
[Ensembl]
¡û
>W1610986918
LWHF01000084
Bacillota
Enterococcus faecium [LWHF]
67594
67521
-
Met
CAT
[ENA]
¡û
>W1710659472
JXKR01000025
Bacillota
Enterococcus hirae [JXKR]
13648
13723
+
Met
CAT
[ENA]
¡û
>W1710659805
JXLB01000007
Bacillota
Enterococcus ratti [JXLB]
110796
110871
+
Met
CAT
[ENA]
¡û
>W1710743211
LGUK01000026
Bacillota
Enterococcus hirae 88-15-E09 [LGUK]
20545
20470
-
Met
CAT
[ENA]
¡û
>W1710743275
LGUL01000012
Bacillota
Enterococcus hirae 78-09-C1 [LGUL]
20061
19986
-
Met
CAT
[ENA]
¡û
>W1710743301
LGUM01000014
Bacillota
Enterococcus hirae 67-03-C5 [LGUM]
38825
38750
-
Met
CAT
[ENA]
¡û
>W1710743381
LGUN01000031
Bacillota
Enterococcus hirae 57-03-H11 [LGUN]
3958
3883
-
Met
CAT
[ENA]
¡û
>W1710743426
LGUO01000038
Bacillota
Enterococcus hirae 57-09-G6 [LGUO]
13326
13401
+
Met
CAT
[ENA]
¡û
>W1710762421
LIJA01000025
Bacillota
Enterococcus hirae 81-15-F4 [LIJA]
44011
43936
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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