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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.162543 (67 seq.)
>W1710923939
LOCN01000009
Gammaproteobacteria
Moritella sp. JT01 [LOCN]
30040
29964
-
Met
CAT
[ENA]
¡û
>W1710923945
LOCN01000009
Gammaproteobacteria
Moritella sp. JT01 [LOCN]
29194
29118
-
Met
CAT
[ENA]
¡û
>W1711314145
MAUF01000047
Gammaproteobacteria
Acinetobacter defluvii WCHA30 [MAUF]
2879
2955
+
Met
CAT
[ENA]
¡û
>W131179782
ARMR01000035
Gammaproteobacteria
Moritella marina ATCC 15381 [ARMR]
76757
76833
+
Met
CAT
[ENA]
¡û
>W1712003188
NEGB01000002
Gammaproteobacteria
Acinetobacter silvestris ANC 4999 [NEGB]
519275
519199
-
Met
CAT
[ENA]
¡û
>W1712003269
NEGC01000003
Gammaproteobacteria
Acinetobacter sp. ANC 4470 [NEGC]
289018
288942
-
Met
CAT
[ENA]
¡û
>W1712003689
NEGI01000005
Gammaproteobacteria
Acinetobacter sp. ANC 4648 [NEGI]
308954
308878
-
Met
CAT
[ENA]
¡û
>W1712003690
NEGI01000005
Gammaproteobacteria
Acinetobacter sp. ANC 4648 [NEGI]
308168
308092
-
Met
CAT
[ENA]
¡û
>W1712003750
NEGJ01000005
Gammaproteobacteria
Acinetobacter sp. ANC 3832 [NEGJ]
171272
171196
-
Met
CAT
[ENA]
¡û
>W1712003751
NEGJ01000005
Gammaproteobacteria
Acinetobacter sp. ANC 3832 [NEGJ]
169278
169202
-
Met
CAT
[ENA]
¡û
>W131115978
APQB01000019
Gammaproteobacteria
Acinetobacter ursingii NIPH 706 [APQB]
325684
325760
+
Met
CAT
[ENA]
¡û
>W131116050
APQC01000009
Gammaproteobacteria
Acinetobacter ursingii ANC 3649 [APQC]
12191
12267
+
Met
CAT
[ENA]
¡û
>w027879
ABCQ01000001
Gammaproteobacteria
Moritella sp. PE36 [ABCQ]
179191
179269
+
Met
CAT
[ENA]
¡û
>w027873
ABCQ01000001
Gammaproteobacteria
Moritella sp. PE36 [ABCQ]
178355
178433
+
Met
CAT
[ENA]
¡û
>C171052993
CP016895
Gammaproteobacteria
Acinetobacter larvae BRTC-1 [CP016895]
1135410
1135486
+
Met
CAT
-
¡û
>C171052994
CP016895
Gammaproteobacteria
Acinetobacter larvae BRTC-1 [CP016895]
1135670
1135746
+
Met
CAT
-
¡û
>WENV181205870
OFAQ01002846
[OFAQ] metagenome; hydrothermal vent
784
860
+
Met
CAT
[ENA]
¢þ
>WENV181206438
OFAV01000548
[OFAV] metagenome; hydrothermal vent
1044
1120
+
Met
CAT
[ENA]
¢þ
>WENV181206962
OFAX01007182
[OFAX] metagenome; hydrothermal vent
109
33
-
Met
CAT
[ENA]
¢þ
>W141449355
JEZN01000004
Gammaproteobacteria
Acinetobacter sp. 479375 479375 [JEZN]
29005
28929
-
Met
CAT
[ENA]
¡û
>C181178016
CP029397
Gammaproteobacteria
Acinetobacter defluvii WCHA30 [CP029397]
781601
781677
+
Met
CAT
-
¡û
>C181204200
LS483250
Gammaproteobacteria
Moritella yayanosii DB21MT 5 [LS483250]
3639384
3639308
-
Met
CAT
-
¡û
>C181204206
LS483250
Gammaproteobacteria
Moritella yayanosii DB21MT 5 [LS483250]
3638560
3638484
-
Met
CAT
-
¡û
>C191005565
AP018824
Gammaproteobacteria
Acinetobacter ursingii M3 [AP018824]
2005780
2005856
+
Met
CAT
-
¡û
>W1910237494
FPLD01000060
Gammaproteobacteria
Moritella viscosa [FPLD]
78834
78910
+
Met
CAT
[ENA]
¡û
>W1910237500
FPLD01000060
Gammaproteobacteria
Moritella viscosa [FPLD]
79649
79725
+
Met
CAT
[ENA]
¡û
>W1910237574
FPLE01000067
Gammaproteobacteria
Moritella viscosa [FPLE]
78377
78453
+
Met
CAT
[ENA]
¡û
>W1910237580
FPLE01000067
Gammaproteobacteria
Moritella viscosa [FPLE]
79191
79267
+
Met
CAT
[ENA]
¡û
>W1910237656
FPLF01000069
Gammaproteobacteria
Moritella viscosa [FPLF]
78330
78406
+
Met
CAT
[ENA]
¡û
>W1910237659
FPLF01000070
Gammaproteobacteria
Moritella viscosa [FPLF]
165
241
+
Met
CAT
[ENA]
¡û
>W1910237722
FPLG01000082
Gammaproteobacteria
Moritella viscosa [FPLG]
78364
78440
+
Met
CAT
[ENA]
¡û
>W1910237896
FPLJ01000050
Gammaproteobacteria
Moritella viscosa [FPLJ]
78366
78442
+
Met
CAT
[ENA]
¡û
>W1910237902
FPLJ01000050
Gammaproteobacteria
Moritella viscosa [FPLJ]
79181
79257
+
Met
CAT
[ENA]
¡û
>W1910282719
FRDQ01000063
Gammaproteobacteria
Moritella viscosa [FRDQ]
78333
78409
+
Met
CAT
[ENA]
¡û
>W1910282725
FRDQ01000063
Gammaproteobacteria
Moritella viscosa [FRDQ]
79148
79224
+
Met
CAT
[ENA]
¡û
>W1910282800
FRDR01000079
Gammaproteobacteria
Moritella viscosa [FRDR]
78333
78409
+
Met
CAT
[ENA]
¡û
>W1910282865
FRDS01000072
Gammaproteobacteria
Moritella viscosa [FRDS]
78430
78506
+
Met
CAT
[ENA]
¡û
>W1910282871
FRDS01000072
Gammaproteobacteria
Moritella viscosa [FRDS]
79245
79321
+
Met
CAT
[ENA]
¡û
>W1910282935
FRDT01000061
Gammaproteobacteria
Moritella viscosa [FRDT]
78550
78626
+
Met
CAT
[ENA]
¡û
>W1910282941
FRDT01000061
Gammaproteobacteria
Moritella viscosa [FRDT]
79365
79441
+
Met
CAT
[ENA]
¡û
>W1910283022
FRDU01000076
Gammaproteobacteria
Moritella viscosa [FRDU]
78332
78408
+
Met
CAT
[ENA]
¡û
>W1910283028
FRDU01000076
Gammaproteobacteria
Moritella viscosa [FRDU]
79147
79223
+
Met
CAT
[ENA]
¡û
>W1910283093
FRDV01000086
Gammaproteobacteria
Moritella viscosa [FRDV]
78447
78523
+
Met
CAT
[ENA]
¡û
>W1910283098
FRDV01000087
Gammaproteobacteria
Moritella viscosa [FRDV]
175
251
+
Met
CAT
[ENA]
¡û
>W1910283175
FRDW01000043
Gammaproteobacteria
Moritella viscosa [FRDW]
78563
78639
+
Met
CAT
[ENA]
¡û
>W1910283181
FRDW01000043
Gammaproteobacteria
Moritella viscosa [FRDW]
79378
79454
+
Met
CAT
[ENA]
¡û
>W1911597422
PNHY01000001
Gammaproteobacteria
Acinetobacter ursingii UMB1319 [PNHY]
113101
113177
+
Met
CAT
[ENA]
¡û
>W1810043783
BHGA01000020
Gammaproteobacteria
Acinetobacter ursingii OCU_Ac4 [BHGA]
91281
91357
+
Met
CAT
[ENA]
¡û
>W1810157576
PJCA01000034
Gammaproteobacteria
Moritella sp. Urea-trap-13 [PJCA]
74761
74837
+
Met
CAT
[ENA]
¡û
>W1810157582
PJCA01000034
Gammaproteobacteria
Moritella sp. Urea-trap-13 [PJCA]
75585
75661
+
Met
CAT
[ENA]
¡û
>W1810304612
PTPV01000021
Gammaproteobacteria
Acinetobacter ursingii blaTEM-116 [PTPV]
10421
10345
-
Met
CAT
[ENA]
¡û
>C151103113
LN554852
Gammaproteobacteria
Moritella viscosa [LN554852]
4435175
4435251
+
Met
CAT
[Ensembl]
¡û
>C151103119
LN554852
Gammaproteobacteria
Moritella viscosa [LN554852]
4435989
4436065
+
Met
CAT
[Ensembl]
¡û
>W1510018008
BBTT01000013
Gammaproteobacteria
Acinetobacter ursingii NBRC 110511 [BBTT]
59085
59009
-
Met
CAT
[ENA]
¡û
>W1510018423
BBUB01000014
Gammaproteobacteria
Acinetobacter ursingii NBRC 110512 [BBUB]
12175
12251
+
Met
CAT
[ENA]
¡û
>W1510018464
BBUC01000007
Gammaproteobacteria
Acinetobacter ursingii NBRC 110605 [BBUC]
59085
59009
-
Met
CAT
[ENA]
¡û
>W1511456719
JVHT01000035
Gammaproteobacteria
Acinetobacter ursingii 421_ABAU [JVHT]
59370
59294
-
Met
CAT
[ENA]
¡û
>W1511500911
JXBK01000001
Gammaproteobacteria
Acinetobacter harbinensis HITLi 7 [JXBK]
1141970
1142046
+
Met
CAT
[ENA]
¡û
>W1511500912
JXBK01000001
Gammaproteobacteria
Acinetobacter harbinensis HITLi 7 [JXBK]
1143021
1143097
+
Met
CAT
[ENA]
¡û
>W121046924
AIEA01000015
Gammaproteobacteria
Acinetobacter ursingii DSM 16037 = CIP 107286 [AIEA]
68006
68082
+
Met
CAT
[ENA]
¡û
>W1610061055
BCMC01000035
Gammaproteobacteria
Acinetobacter ursingii [BCMC]
12096
12172
+
Met
CAT
[ENA]
¡û
>W121102700
AKXQ01000025
Gammaproteobacteria
Moritella dasanensis ArB 0140 [AKXQ]
76123
76199
+
Met
CAT
[ENA]
¡û
>W121102724
AKXQ01000047
Gammaproteobacteria
Moritella dasanensis ArB 0140 [AKXQ]
11484
11408
-
Met
CAT
[ENA]
¡û
>W121113027
ALOE01000025
Gammaproteobacteria
Moritella marina ATCC 15381 [ALOE]
10887
10811
-
Met
CAT
[ENA]
¡û
>W1610781540
LOCN01000009
Gammaproteobacteria
Moritella sp. JT01 [LOCN]
30040
29964
-
Met
CAT
[ENA]
¡û
>W1610781546
LOCN01000009
Gammaproteobacteria
Moritella sp. JT01 [LOCN]
29194
29118
-
Met
CAT
[ENA]
¡û
>W1710058351
BCMC01000035
Gammaproteobacteria
Acinetobacter ursingii [BCMC]
12096
12172
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK