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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.16260 (43 seq.)
>W1710916183
LNUU01000002
Actinomycetota
Arthrobacter sp. EpRS66 [LNUU]
446353
446265
-
Ser
TGA
[ENA]
¡û
>W1711096370
LTHR01000074
Actinomycetota
Rothia sp. HMSC075F09 [LTHR]
28095
28183
+
Ser
TGA
[ENA]
¡û
>W1711098328
LTJM01000026
Actinomycetota
Rothia sp. HMSC072B03 [LTJM]
1263
1175
-
Ser
TGA
[ENA]
¡û
>W1711104211
LTPL01000079
Actinomycetota
Rothia sp. HMSC065C03 [LTPL]
179
91
-
Ser
TGA
[ENA]
¡û
>W1711108221
LTTM01000045
Actinomycetota
Rothia sp. HMSC065D09 [LTTM]
89241
89153
-
Ser
TGA
[ENA]
¡û
>W1711228071
LXWF01000040
Actinomycetota
Rothia nasimurium [LXWF]
214583
214673
+
Ser
TGA
[ENA]
¡û
>W131210577
ATKN01000023
Actinomycetota
Arthrobacter sp. PAO19 [ATKN]
20715
20803
+
Ser
TGA
[ENA]
¡û
>W1711618498
MPBI01000004
Actinomycetota
Glutamicibacter sp. 0426 [MPBI]
322051
321963
-
Ser
TGA
[ENA]
¡û
>WENV180178332
OAWH01004286
[OAWH] human gut metagenome; faeces
243
331
+
Ser
TGA
[ENA]
¢þ
>WENV180492785
OBZX01001613
[OBZX] human gut metagenome; faeces
1764
1676
-
Ser
TGA
[ENA]
¢þ
>WENV180493278
OBZY01006008
[OBZY] human gut metagenome; faeces
1154
1066
-
Ser
TGA
[ENA]
¢þ
>WENV180551591
OCJG01002029
[OCJG] human oral metagenome; human oral
420
508
+
Ser
TGA
[ENA]
¢þ
>WENV180722118
ODGL01096870
[ODGL] human metagenome; G_DNA_Subgingival plaque
124
36
-
Ser
TGA
[ENA]
¢þ
>WENV180782649
ODIQ01000092
[ODIQ] human metagenome; G_DNA_Tongue dorsum
49864
49776
-
Ser
TGA
[ENA]
¢þ
>WENV180783063
ODIQ01001232
[ODIQ] human metagenome; G_DNA_Tongue dorsum
8079
8167
+
Ser
TGA
[ENA]
¢þ
>WENV180819751
ODJR01000396
[ODJR] human metagenome; G_DNA_Tongue dorsum
36811
36899
+
Ser
TGA
[ENA]
¢þ
>WENV180830963
ODKB01022738
[ODKB] human metagenome; G_DNA_Tongue dorsum
1146
1234
+
Ser
TGA
[ENA]
¢þ
>WENV180842137
ODKM01000422
[ODKM] human metagenome; G_DNA_Buccal mucosa
670
758
+
Ser
TGA
[ENA]
¢þ
>WENV180896289
ODNI01000276
[ODNI] human metagenome; G_DNA_Tongue dorsum
24948
24860
-
Ser
TGA
[ENA]
¢þ
>WENV180914723
ODSZ01003932
[ODSZ] human metagenome; G_DNA_Buccal mucosa
1110
1022
-
Ser
TGA
[ENA]
¢þ
>WENV180914806
ODSZ01013572
[ODSZ] human metagenome; G_DNA_Buccal mucosa
422
510
+
Ser
TGA
[ENA]
¢þ
>WENV180986921
ODVK01002082
[ODVK] human metagenome; G_DNA_Supragingival plaque
462
550
+
Ser
TGA
[ENA]
¢þ
>WENV181006182
ODWA01003409
[ODWA] human metagenome; G_DNA_Buccal mucosa
37
125
+
Ser
TGA
[ENA]
¢þ
>WENV181027824
ODXD01069690
[ODXD] human metagenome; G_DNA_Buccal mucosa
134
46
-
Ser
TGA
[ENA]
¢þ
>C191100410
CP033081
Actinomycetota
Glutamicibacter nicotianae OTC-16 [CP033081]
575754
575666
-
Ser
TGA
-
¡û
>W1910182816
BJNE01000022
Actinomycetota
Glutamicibacter nicotianae NBRC 14234 [BJNE]
17365
17277
-
Ser
TGA
[ENA]
¡û
>W1910183719
BJNY01000027
Actinomycetota
Glutamicibacter uratoxydans NBRC 15515 [BJNY]
4524
4436
-
Ser
TGA
[ENA]
¡û
>W1910431632
FVUK01000019
Actinomycetota
Mycobacteroides abscessus subsp. bolletii 137 [FVUK]
82486
82574
+
Ser
TGA
[ENA]
¡û
>W1911567815
PCPV01000018
Actinomycetota
Arthrobacter sp. MYb222 [PCPV]
21774
21862
+
Ser
TGA
[ENA]
¡û
>W1911568054
PCPZ01000005
Actinomycetota
Arthrobacter sp. MYb214 [PCPZ]
248685
248597
-
Ser
TGA
[ENA]
¡û
>W1911597790
PNQX01000002
Actinomycetota
Glutamicibacter arilaitensis JB182 [PNQX]
204583
204671
+
Ser
TGA
[ENA]
¡û
>W1810089803
PGEY01000001
Actinomycetota
Glutamicibacter mysorens DSM 12798 [PGEY]
3418516
3418428
-
Ser
TGA
[ENA]
¡û
>W1810201533
POAF01000006
Actinomycetota
Glutamicibacter soli NHPC-3 [POAF]
318732
318644
-
Ser
TGA
[ENA]
¡û
>C151092373
CP012171
Actinomycetota
Arthrobacter sp. LS16 [CP012171]
505459
505371
-
Ser
TGA
-
¡û
>C11100120
FQ311875
Actinomycetota
Glutamicibacter arilaitensis Re117 [FQ311875]
556062
555974
-
Ser
TGA
[Ensembl]
¡û
>W1511471186
JVXR01000003
Actinomycetota
Rothia dentocariosa 1234_RDEN [JVXR]
46381
46469
+
Ser
TGA
[ENA]
¡û
>W1511483967
JWMD01000030
Actinomycetota
Arthrobacter sp. W1 [JWMD]
16576
16488
-
Ser
TGA
[ENA]
¡û
>W1511624300
LCYH01000011
Actinomycetota
Arthrobacter sp. YC-RL1 [LCYH]
47873
47961
+
Ser
TGA
[ENA]
¡û
>C161045476
CP012750
Actinomycetota
Glutamicibacter halophytocola KLBMP 5180 [CP012750]
582777
582689
-
Ser
TGA
[Ensembl]
¡û
>C161055113
CP013297
Actinomycetota
Arthrobacter sp. YC-RL1 [CP013297]
3414433
3414521
+
Ser
TGA
[Ensembl]
¡û
>W1610067428
BCQO01000006
Actinomycetota
Glutamicibacter mysorens NBRC 103060 [BCQO]
303623
303535
-
Ser
TGA
[ENA]
¡û
>W1610774422
LNUU01000002
Actinomycetota
Arthrobacter sp. EpRS66 [LNUU]
446353
446265
-
Ser
TGA
[ENA]
¡û
>W1710064801
BCQO01000006
Actinomycetota
Glutamicibacter mysorens NBRC 103060 [BCQO]
303623
303535
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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