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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.162603 (16 seq.)
>W1711091120
LTBC01000070
Bacillota
Moorella mulderi DSM 14980 [LTBC]
297
221
-
Ile
GAT
[ENA]
¡û
>W1711352346
MDDC01000054
Bacillota
Moorella thermoacetica [MDDC]
411
335
-
Ile
GAT
[ENA]
¡û
>W1711428564
MIHH01000082
Bacillota
Moorella thermoacetica [MIHH]
134
210
+
Ile
GAT
[ENA]
¡û
>C171055169
CP017019
Bacillota
Moorella thermoacetica DSM 103132 [CP017019]
156418
156494
+
Ile
GAT
-
¡û
>W131237171
AUMW01000035
Bacillota
Desulfotruncus alcoholivorax DSM 16058 [AUMW]
21258
21182
-
Ile
GAT
[ENA]
¡û
>C014158
CP000232
Bacillota
Moorella thermoacetica [CP000232]
149668
149744
+
Ile
GAT
[Ensembl]
¡û
>WENV170562424
CZCB01002710
[CZCB] anaerobic digester metagenome; anaerobic digester
574
650
+
Ile
GAT
[ENA]
¢þ
>C191073415
CP031054
Bacillota
Moorella thermoacetica 39073-HH [CP031054]
156395
156471
+
Ile
GAT
-
¡û
>W09100962
AADT03000052
Bacillota
Moorella thermoacetica ATCC 39073 [AADT]
2040
2116
+
Ile
GAT
[ENA]
¡û
>W1910180148
BJKO01000004
Bacillota
Moorella sp. E306M [BJKO]
137
213
+
Ile
GAT
[ENA]
¡û
>C151094344
CP012369
Bacillota
Moorella thermoacetica DSM 521 [CP012369]
149319
149395
+
Ile
GAT
-
¡û
>C151094394
CP012370
Bacillota
Moorella thermoacetica DSM 2955 [CP012370]
149318
149394
+
Ile
GAT
-
¡û
>W1510100242
CELZ01000013
Bacillota
Moorella glycerini NMP [CELZ]
36202
36126
-
Ile
GAT
[ENA]
¡û
>W1610925319
LTBC01000070
Bacillota
Moorella mulderi DSM 14980 [LTBC]
297
221
-
Ile
GAT
[ENA]
¡û
>W1710559518
FOMR01000013
Bacillota
Lentibacillus persicus [FOMR]
89910
89984
+
Ile
GAT
[ENA]
¡û
>W1710574798
FOYM01000018
Bacillota
Desulfoscipio geothermicus geothermicum [FOYM]
59438
59514
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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