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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.162620 (7 seq.)
>WENV181358762
OFMV01013296
[OFMV] human gut metagenome; human gut
74
1
-
Ile2
CAT
[ENA]
¡û
>WENV181981486
OHAG01002709
[OHAG] human gut metagenome; faeces
8990
8917
-
Ile2
CAT
[ENA]
¡û
>WENV182420924
OIGO01020897
[OIGO] human gut metagenome; human gut
466
393
-
Ile2
CAT
[ENA]
¡û
>WENV182532146
OIXA01000995
[OIXA] human gut metagenome; faeces
33495
33568
+
Ile2
CAT
[ENA]
¡û
>WENV182720462
OJPN01014071
[OJPN] human gut metagenome; stool sample
911
984
+
Ile2
CAT
[ENA]
¡û
>WENV183066934
OLIL01002360
[OLIL] metagenome; faeces
540
613
+
Ile2
CAT
[ENA]
¡û
>W1810871878
QUDH01000023
Bacillota
Clostridium sp. AF50-3 [QUDH]
34154
34227
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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