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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.162647 (26 seq.)
>W131231062
AUID01000042
Bacillota
Proteocatella sphenisci DSM 23131 [AUID]
2678
2602
-
Met
CAT
[ENA]
¡û
>C000798
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
1842650
1842726
+
Met
CAT
[Ensembl]
¡û
>C000843
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
4444946
4444870
-
Met
CAT
[Ensembl]
¡û
>C000863
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
4436352
4436276
-
Met
CAT
[Ensembl]
¡û
>w010480
AAKU01000254
Bacillota
Alkaliphilus metalliredigens QYMF [AAKU]
118
40
-
Met
CAT
[ENA]
¡û
>w010457
AAKU01000209
Bacillota
Alkaliphilus metalliredigens QYMF [AAKU]
2639
2717
+
Met
CAT
[ENA]
¡û
>w010437
AAKU01000148
Bacillota
Alkaliphilus metalliredigens QYMF [AAKU]
6547
6625
+
Met
CAT
[ENA]
¡û
>w010396
AAKU01000026
Bacillota
Alkaliphilus metalliredigens QYMF [AAKU]
1155
1233
+
Met
CAT
[ENA]
¡û
>C171064248
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
2590237
2590313
+
Met
CAT
-
¡û
>C171064270
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
2612051
2612127
+
Met
CAT
-
¡û
>C171064340
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
702177
702101
-
Met
CAT
-
¡û
>C171064357
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
689177
689101
-
Met
CAT
-
¡û
>C171109195
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
1396063
1396139
+
Met
CAT
-
¡û
>C171109217
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
1417877
1417953
+
Met
CAT
-
¡û
>C171109282
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
4094729
4094653
-
Met
CAT
-
¡û
>C171109299
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
4081729
4081653
-
Met
CAT
-
¡û
>WENV180847727
ODKT01147997
[ODKT] human metagenome; G_DNA_Supragingival plaque
5
81
+
Met
CAT
[ENA]
¢þ
>WENV180853126
ODKW01031561
[ODKW] human metagenome; G_DNA_Tongue dorsum
215
291
+
Met
CAT
[ENA]
¢þ
>WENV180858771
ODLC01030310
[ODLC] human metagenome; G_DNA_Tongue dorsum
348
272
-
Met
CAT
[ENA]
¢þ
>WENV181180070
OEJT01066305
[OEJT] human metagenome; G_DNA_Supragingival plaque
61
137
+
Met
CAT
[ENA]
¢þ
>W1910548219
FZOJ01000008
Bacillota
Anaerovirgula multivorans SCA [FZOJ]
186729
186653
-
Met
CAT
[ENA]
¡û
>C151057227
CP009687
Bacillota
Clostridium aceticum DSM 1496 [CP009687]
1166821
1166897
+
Met
CAT
[Ensembl]
¡û
>C11106366
FP565809
Bacillota
Acetoanaerobium sticklandii DSM 519 [FP565809]
569645
569721
+
Met
CAT
[Ensembl]
¡û
>C11106397
FP565809
Bacillota
Acetoanaerobium sticklandii DSM 519 [FP565809]
2509256
2509180
-
Met
CAT
[Ensembl]
¡û
>W1710602790
FUYN01000010
Bacillota
Acetoanaerobium noterae [FUYN]
40375
40299
-
Met
CAT
[ENA]
¡û
>W1710602810
FUYN01000019
Bacillota
Acetoanaerobium noterae [FUYN]
886
962
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK