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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.162668 (123 seq.)
>W1711056120
LRVM01000002
Bacillota
Anaerotignum neopropionicum [LRVM]
567
641
+
His
GTG
[ENA]
¡û
>W131238535
BAHW02000013
Bacillota
Clostridiales bacterium VE202-09 [BAHW]
38508
38582
+
His
GTG
[ENA]
¡û
>W131144758
AQFQ01000029
Bacillota
Clostridium sp. MD294 ASF356 [AQFQ]
205599
205525
-
His
GTG
[ENA]
¡û
>WENV180332238
OBLC01107014
[OBLC] human gut metagenome; human gut
97
171
+
His
GTG
[ENA]
¡û
>WENV180401286
OBRJ01037785
[OBRJ] human gut metagenome; ENVO:feces
60
134
+
His
GTG
[ENA]
¡û
>WENV180534980
OCHM01182494
[OCHM] human gut metagenome; human gut
137
63
-
His
GTG
[ENA]
¡û
>WENV180577621
OCMA01134358
[OCMA] human gut metagenome; human gut
57
131
+
His
GTG
[ENA]
¡û
>WENV180621232
OCQC01000624
[OCQC] human gut metagenome; human gut
17
92
+
His
GTG
[ENA]
¡û
>WENV180670007
OCVV011291862
[OCVV] gut metagenome; gut
933
859
-
His
GTG
[ENA]
¡û
>WENV180670010
OCVV011291862
[OCVV] gut metagenome; gut
933
859
-
His
GTG
[ENA]
¡û
>WENV180705339
ODEJ01003463
[ODEJ] human metagenome; G_DNA_Tongue dorsum
79
153
+
His
GTG
[ENA]
¡û
>WENV180747647
ODHN01012700
[ODHN] human metagenome; G_DNA_Stool
272
346
+
His
GTG
[ENA]
¡û
>WENV180773546
ODIJ01000541
[ODIJ] human metagenome; G_DNA_Tongue dorsum
20539
20613
+
His
GTG
[ENA]
¡û
>WENV180775594
ODIK01001593
[ODIK] human metagenome; G_DNA_Tongue dorsum
963
889
-
His
GTG
[ENA]
¡û
>WENV180787783
ODIS01015287
[ODIS] human metagenome; G_DNA_Supragingival plaque
76
150
+
His
GTG
[ENA]
¡û
>WENV180805890
ODJH01000464
[ODJH] human metagenome; G_DNA_Tongue dorsum
22948
22874
-
His
GTG
[ENA]
¡û
>WENV180821961
ODJS01175223
[ODJS] human metagenome; G_DNA_Tongue dorsum
145
71
-
His
GTG
[ENA]
¡û
>WENV180864531
ODLH01058190
[ODLH] human metagenome; G_DNA_Tongue dorsum
79
153
+
His
GTG
[ENA]
¡û
>WENV180909006
ODQJ01060673
[ODQJ] human metagenome; G_DNA_Stool
380
306
-
His
GTG
[ENA]
¡û
>WENV180923363
ODTJ01140637
[ODTJ] human metagenome; G_DNA_Supragingival plaque
90
164
+
His
GTG
[ENA]
¡û
>WENV180947209
ODUE01066458
[ODUE] human metagenome; G_DNA_Stool
245
171
-
His
GTG
[ENA]
¡û
>WENV180957339
ODUK01030198
[ODUK] human metagenome; G_DNA_Stool
475
401
-
His
GTG
[ENA]
¡û
>WENV180959913
ODUM01005279
[ODUM] human metagenome; G_DNA_Tongue dorsum
984
910
-
His
GTG
[ENA]
¡û
>WENV181020266
ODWU01095489
[ODWU] human metagenome; G_DNA_Supragingival plaque
332
258
-
His
GTG
[ENA]
¡û
>WENV181069727
ODZZ01204373
[ODZZ] human metagenome; G_DNA_Tongue dorsum
79
153
+
His
GTG
[ENA]
¡û
>WENV181072751
OEAN01022728
[OEAN] human metagenome; G_DNA_Stool
276
202
-
His
GTG
[ENA]
¡û
>WENV181266125
OFGB01014840
[OFGB] mouse gut metagenome; faeces
1925
1851
-
His
GTG
[ENA]
¡û
>WENV181302547
OFHO01042233
[OFHO] mouse gut metagenome; faeces
691
765
+
His
GTG
[ENA]
¡û
>WENV181366714
OFPS01012647
[OFPS] human gut metagenome; human gut
2520
2446
-
His
GTG
[ENA]
¡û
>WENV181422446
OGCO01001255
[OGCO] human gut metagenome; human gut
10070
10144
+
His
GTG
[ENA]
¡û
>WENV181470091
OGEU01001178
[OGEU] metagenome; Human gut stool
23158
23083
-
His
GTG
[ENA]
¡û
>WENV181476760
OGFF01000230
[OGFF] metagenome; Human gut stool
555
630
+
His
GTG
[ENA]
¡û
>WENV181484672
OGFL01010616
[OGFL] metagenome; Human gut stool
2359
2285
-
His
GTG
[ENA]
¡û
>WENV181514516
OGGV01010962
[OGGV] metagenome; Human gut stool
167
241
+
His
GTG
[ENA]
¡û
>WENV181580423
OGKA01000027
[OGKA] metagenome; Human gut stool
168436
168362
-
His
GTG
[ENA]
¡û
>WENV181584863
OGKE01019133
[OGKE] metagenome; Human gut stool
557
631
+
His
GTG
[ENA]
¡û
>WENV181612586
OGLS01022840
[OGLS] metagenome; Human gut stool
17
91
+
His
GTG
[ENA]
¡û
>WENV181630051
OGMP01027205
[OGMP] metagenome; Human gut stool
30
104
+
His
GTG
[ENA]
¡û
>WENV181735705
OGQG01002715
[OGQG] human gut metagenome; faeces
86
161
+
His
GTG
[ENA]
¡û
>WENV181861523
OGWR01057606
[OGWR] human gut metagenome; faeces
622
548
-
His
GTG
[ENA]
¡û
>WENV181879186
OGXF01000009
[OGXF] human gut metagenome; faeces
580
654
+
His
GTG
[ENA]
¡û
>WENV181936004
OGYV01000022
[OGYV] human gut metagenome; faeces
3703
3777
+
His
GTG
[ENA]
¡û
>WENV181947767
OGZD01034478
[OGZD] human gut metagenome; faeces
748
822
+
His
GTG
[ENA]
¡û
>WENV181950910
OGZG01018677
[OGZG] human gut metagenome; faeces
104
30
-
His
GTG
[ENA]
¡û
>WENV181958691
OGZM01000300
[OGZM] human gut metagenome; faeces
476
550
+
His
GTG
[ENA]
¡û
>WENV181967889
OGZV01042020
[OGZV] human gut metagenome; faeces
618
692
+
His
GTG
[ENA]
¡û
>WENV181983779
OHAI01000833
[OHAI] human gut metagenome; faeces
22710
22784
+
His
GTG
[ENA]
¡û
>WENV182049415
OHEC01001455
[OHEC] human gut metagenome; feces
625
699
+
His
GTG
[ENA]
¡û
>WENV182082623
OHGL01003272
[OHGL] human gut metagenome; feces
7
81
+
His
GTG
[ENA]
¡û
>WENV182090049
OHHB01004054
[OHHB] human gut metagenome; feces
2199
2125
-
His
GTG
[ENA]
¡û
>WENV182107625
OHIK01023804
[OHIK] human gut metagenome; feces
9
83
+
His
GTG
[ENA]
¡û
>WENV182214888
OHQK01012745
[OHQK] human gut metagenome; feces
657
731
+
His
GTG
[ENA]
¡û
>W141220543
AZXX01000009
Bacillota
Lachnoanaerobaculum sp. MSX33 [AZXX]
32662
32588
-
His
GTG
[ENA]
¡û
>WENV182248754
OHSP01000625
[OHSP] human gut metagenome; feces
4411
4337
-
His
GTG
[ENA]
¡û
>WENV182294457
OHWD01031501
[OHWD] human gut metagenome; feces
673
599
-
His
GTG
[ENA]
¡û
>WENV182351168
OIBG01007980
[OIBG] human gut metagenome; feces
25
99
+
His
GTG
[ENA]
¡û
>WENV182376115
OIDD01003543
[OIDD] human gut metagenome; feces
365
291
-
His
GTG
[ENA]
¡û
>WENV182487612
OIRW01014641
[OIRW] human gut metagenome; human gut
269
343
+
His
GTG
[ENA]
¡û
>WENV182531025
OIWV01023628
[OIWV] human gut metagenome; faeces
554
628
+
His
GTG
[ENA]
¡û
>WENV182715767
OJPI01015335
[OJPI] human gut metagenome; stool sample
322
248
-
His
GTG
[ENA]
¡û
>WENV182731261
OJPZ01047133
[OJPZ] human gut metagenome; stool sample
105
31
-
His
GTG
[ENA]
¡û
>WENV182750722
OJQZ01003178
[OJQZ] human gut metagenome; stool sample
2848
2774
-
His
GTG
[ENA]
¡û
>WENV182762633
OJRN01034961
[OJRN] human gut metagenome; stool sample
20
95
+
His
GTG
[ENA]
¡û
>WENV182763574
OJRO01023299
[OJRO] human gut metagenome; stool sample
298
224
-
His
GTG
[ENA]
¡û
>WENV182777934
OJSC01012135
[OJSC] human gut metagenome; human gut
557
631
+
His
GTG
[ENA]
¡û
>WENV182907912
OKTF01002063
[OKTF] human gut metagenome; feces
5533
5607
+
His
GTG
[ENA]
¡û
>WENV182981899
OKYY01021877
[OKYY] human gut metagenome; human gut
118
192
+
His
GTG
[ENA]
¡û
>WENV183049922
OLGH01043569
[OLGH] human gut metagenome; faeces
88
162
+
His
GTG
[ENA]
¡û
>WENV183118584
OLNT01000001
[OLNT] human gut metagenome; faeces
32623
32698
+
His
GTG
[ENA]
¡û
>WENV183153877
OLOR01000699
[OLOR] human gut metagenome; faeces
35091
35017
-
His
GTG
[ENA]
¡û
>WENV183165888
OLOX01019790
[OLOX] human gut metagenome; faeces
906
980
+
His
GTG
[ENA]
¡û
>WENV183186017
OLPO01000027
[OLPO] human gut metagenome; faeces
154335
154261
-
His
GTG
[ENA]
¡û
>WENV183194004
OLPS01018476
[OLPS] human gut metagenome; faeces
2299
2373
+
His
GTG
[ENA]
¡û
>WENV183234910
OLQW01000567
[OLQW] human gut metagenome; faeces
5
79
+
His
GTG
[ENA]
¡û
>WENV183281043
OLSB01028421
[OLSB] human gut metagenome; faeces
206
280
+
His
GTG
[ENA]
¡û
>WENV183294586
OLSK01037005
[OLSK] human gut metagenome; faeces
1075
1001
-
His
GTG
[ENA]
¡û
>WENV183302297
OLSP01011053
[OLSP] human gut metagenome; faeces
3309
3235
-
His
GTG
[ENA]
¡û
>WENV183329424
OLWB01000281
[OLWB] human gut metagenome; faeces
275
349
+
His
GTG
[ENA]
¡û
>WENV183375917
OLYA01032666
[OLYA] human gut metagenome; feces
562
488
-
His
GTG
[ENA]
¡û
>WENV183441002
OMCH01008956
[OMCH] human gut metagenome; feces
2539
2465
-
His
GTG
[ENA]
¡û
>WENV183481764
OMFK01004932
[OMFK] human gut metagenome; feces
17
91
+
His
GTG
[ENA]
¡û
>WENV183755689
PPYE01110945
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
4226
4152
-
His
GTG
[ENA]
¡û
>WENV183785273
PPYF01271179
[PPYF] human gut metagenome; stool from patient with Crohn's disease
112
186
+
His
GTG
[ENA]
¡û
>W09119808
ACEC01000068
Bacillota
[Clostridium] methylpentosum DSM 5476 [ACEC]
26847
26771
-
His
GTG
[ENA]
¡û
>W1910128543
BHVZ01000002
Bacillota
Anaerotignum sp. KCTC 15736 [BHVZ]
335118
335044
-
His
GTG
[ENA]
¡û
>W1810876097
QUGL01000001
Bacillota
Firmicutes bacterium AF19-2LB [QUGL]
683919
683845
-
His
GTG
[ENA]
¡û
>W1810879735
QUJC01000001
Bacillota
Firmicutes bacterium AM29-6AC [QUJC]
782687
782613
-
His
GTG
[ENA]
¡û
>W2010081283
BHVZ01000002
Bacillota
Anaerotignum sp. KCTC 15736 [BHVZ]
335118
335044
-
His
GTG
[ENA]
¡û
>W2010250820
CABIYM020000002
Bacillota
Anaerostipes caccae [CABIYM]
265421
265495
+
His
GTG
[ENA]
¡û
>W2010256631
CABJCI020000001
Bacillota
Firmicutes bacterium [CABJCI]
683919
683845
-
His
GTG
[ENA]
¡û
>W2010286874
CABMMD010000184
Bacillota
Acetivibrio ethanolgignens [CABMMD]
1129
1055
-
His
GTG
[ENA]
¡û
>W2010345726
CADBXQ010000026
Bacillota
Ruminococcaceae bacterium [CADBXQ]
11563
11487
-
His
GTG
[ENA]
¡û
>W2010482035
JAAIQM010000014
Bacillota
Anaerostipes hadrus MSK.13.17 [JAAIQM]
93
167
+
His
GTG
[ENA]
¡û
>W2010485772
JAAITC010000036
Bacillota
Anaerostipes hadrus MSK.14.49 [JAAITC]
93
167
+
His
GTG
[ENA]
¡û
>W2011337350
QXWQ01001116
Bacillota
Clostridiaceae bacterium 1XD21-45 [QXWQ]
417
491
+
His
GTG
[ENA]
¡û
>W2012041103
VIRC01000024
Bacillota
Clostridium sp. MD294 [VIRC]
3663
3589
-
His
GTG
[ENA]
¡û
>W2110075251
CACRSQ010000003
Bacillota
Anaerostipes caccae [CACRSQ]
64578
64652
+
His
GTG
[ENA]
¡û
>W2110104720
CAJGBV010000005
Bacillota
Clostridiaceae bacterium [CAJGBV]
77141
77217
+
His
GTG
[ENA]
¡û
>W2110125240
CAJTDC010000054
Bacillota
Clostridia bacterium [CAJTDC]
3667
3593
-
His
GTG
[ENA]
¡û
>W2110244947
JACOOU010000001
Bacillota
Blautia sp. NSJ-34 [JACOOU]
246419
246345
-
His
GTG
[ENA]
¡û
>W2110258593
JACSNT010000006
Bacillota
Anaerotignum lactatifermentans An514 [JACSNT]
191449
191375
-
His
GTG
[ENA]
¡û
>W2110258714
JACSNV010000005
Bacillota
Anaerotignum lactatifermentans An431b [JACSNV]
216
290
+
His
GTG
[ENA]
¡û
>W2110258881
JACSNY010000006
Bacillota
Anaerotignum lactatifermentans An390 [JACSNY]
191365
191291
-
His
GTG
[ENA]
¡û
>W2110303194
JADCKK010000136
Bacillota
Anaerotignum lactatifermentans DSM 109233 [JADCKK]
497
571
+
His
GTG
[ENA]
¡û
>C201310630
LR699012
Bacillota
Anaerostipes hadrus [LR699012]
460553
460479
-
His
GTG
-
¡û
>C211007270
AP023027
Bacillota
Anaerostipes caccae JCM 13470 [AP023027]
2359636
2359562
-
His
GTG
-
¡û
>C211047651
CP036345
Bacillota
Anaerostipes caccae L1-92 DSM 14662 [CP036345]
1232728
1232802
+
His
GTG
-
¡û
>W2110729392
JAJCLY010000009
Bacillota
Anaerostipes caccae SL.2.05 [JAJCLY]
142074
142000
-
His
GTG
[ENA]
¡û
>W2110732082
JAJCPI010000008
Bacillota
Anaerostipes caccae DFI.1.222 [JAJCPI]
26010
26084
+
His
GTG
[ENA]
¡û
>W2110732259
JAJCPM010000007
Bacillota
Anaerostipes caccae DFI.1.218 [JAJCPM]
142074
142000
-
His
GTG
[ENA]
¡û
>W2110732857
JAJCQH010000008
Bacillota
Anaerostipes caccae DFI.1.166 [JAJCQH]
26010
26084
+
His
GTG
[ENA]
¡û
>W2110733167
JAJCQQ010000007
Bacillota
Anaerostipes caccae DFI.1.134 [JAJCQQ]
142074
142000
-
His
GTG
[ENA]
¡û
>C231186711
CP084016
Bacillota
Anaerostipes caccae NBRC 114412 [CP084016]
265440
265366
-
His
GTG
-
¡û
>C231187921
CP084061
Bacillota
Blautia sp. NBRC 113351 [CP084061]
5229966
5230040
+
His
GTG
-
¡û
>C231393276
CP097810
Bacillota
Clostridium sp. MD294 ASF356 [CP097810]
1332734
1332808
+
His
GTG
-
¡û
>C231510506
CP107212
Bacillota
Anaerostipes hadrus [CP107212]
214469
214395
-
His
GTG
-
¡û
>C241327036
CP136422
Bacillota
Blautia coccoides DSM 935 [CP136422]
5152323
5152249
-
His
GTG
-
¡û
>W11114680
ADDS01000012
Bacillota
Lachnospiraceae bacterium oral taxon 500 taxon 107 str. F0167 [ADDS]
104526
104600
+
His
GTG
[ENA]
¡û
>C161068652
CP014223
Bacillota
Anaerotignum propionicum DSM 1682 X2 [CP014223]
2560618
2560544
-
His
GTG
[Ensembl]
¡û
>W1610897166
LRVM01000002
Bacillota
Anaerotignum neopropionicum [LRVM]
567
641
+
His
GTG
[ENA]
¡û
>WENV081862
BAAU01002352
Gut microbiome of Human (healthy human sample F1-S, Adult, Male)
412
334
-
His
GTG
[ENA]
>W1710510028
FMXR01000005
Bacillota
Eubacterium oxidoreducens [FMXR]
44086
44161
+
His
GTG
[ENA]
¡û
>W1710582546
FQUA01000021
Bacillota
Anaerotignum propionicum DSM 1682 [FQUA]
14687
14613
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK