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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.162699 (5 seq.)
>WENV180259900
OBEQ011150831
[OBEQ] groundwater metagenome; groundwater
307
383
+
Arg
TCG
[ENA]
¡û
>WENV170120051
CENJ01173509
[CENJ] marine metagenome genome assembly TARA_009_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1160
1235
+
Arg
TCG
[ENA]
¡û
>WENV170868960
MDTB01169713
[MDTB] marine metagenome; seawater
2572
2647
+
Arg
TCG
[ENA]
¡û
>W1810886760
QUOK01000008
Balneolota
Rhodohalobacter sp. SW132 [QUOK]
177175
177101
-
Arg
TCG
[ENA]
¡û
>W2110305493
JADDJG010000008
Balneolota
Rhodohalobacter sp. SW132 [JADDJG]
177175
177101
-
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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