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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.162715 (23 seq.)
>W1711272450
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
314038
314114
+
Ile
GAT
[ENA]
¡û
>C171019762
CP013074
Chloroflexota
Dehalococcoides mccartyi CG3 [CP013074]
981208
981132
-
Ile
GAT
-
¡û
>C171076974
CP018258
Chloroflexota
Dehalogenimonas formicexedens NSZ-14 [CP018258]
231874
231947
+
Ile
GAT
-
¡û
>C171076975
CP018258
Chloroflexota
Dehalogenimonas formicexedens NSZ-14 [CP018258]
232818
232894
+
Ile
GAT
-
¡û
>C007705
CP000027
Chloroflexota
Dehalococcoides mccartyi 195 [CP000027]
928116
928040
-
Ile
GAT
[Ensembl]
¡û
>W08002852
ABFQ01000011
Chloroflexota
Dehalococcoides mccartyi VS [ABFQ]
33420
33347
-
Ile
GAT
[ENA]
¡û
>WENV183690525
ORMF011611032
[ORMF] groundwater metagenome; groundwater
137
213
+
Ile
GAT
[ENA]
¢þ
>WENV170659080
JXWO01000183
[JXWO] soil metagenome; anaerobic bioreactor containing WBC-2 dechlorinating consortium enriched on 1,1,2,2-TeCA amended
26997
26921
-
Ile
GAT
[ENA]
¢þ
>C181003151
AP017649
Chloroflexota
Dehalococcoides mccartyi UCH-ATV1 [AP017649]
811122
811046
-
Ile
GAT
-
¡û
>C141007782
CP006730
Chloroflexota
Dehalococcoides mccartyi GY50 [CP006730]
839850
839774
-
Ile
GAT
[Ensembl]
¡û
>W1910574701
JQAN02000001
Chloroflexota
Dehalogenimonas etheniformans GP [JQAN]
147663
147587
-
Ile
GAT
[ENA]
¡û
>W1810266178
PQVQ01000004
Chloroflexota
Dehalococcoides mccartyi GEO12 [PQVQ]
1874
1798
-
Ile
GAT
[ENA]
¡û
>W1810569101
QEFQ01000005
Chloroflexota
Dehalogenimonas alkenigignens BRE15M [QEFQ]
89771
89847
+
Ile
GAT
[ENA]
¡û
>C151003225
AP014722
Chloroflexota
Dehalococcoides sp. UCH007 [AP014722]
823489
823413
-
Ile
GAT
[Ensembl]
¡û
>C151015143
CP006949
Chloroflexota
Dehalococcoides mccartyi CG1 [CP006949]
859232
859156
-
Ile
GAT
[Ensembl]
¡û
>C151015189
CP006950
Chloroflexota
Dehalococcoides mccartyi CG4 [CP006950]
891987
891911
-
Ile
GAT
[Ensembl]
¡û
>C151081953
CP011392
Chloroflexota
Dehalogenimonas sp. WBC-2 [CP011392]
1248212
1248136
-
Ile
GAT
-
¡û
>C10105272
CP001827
Chloroflexota
Dehalococcoides mccartyi VS [CP001827]
828334
828258
-
Ile
GAT
[Ensembl]
¡û
>W1610521043
JGYD01000025
Chloroflexota
Dehalococcoides mccartyi [JGYD]
194500
194576
+
Ile
GAT
[ENA]
¡û
>W1610597186
LFDV01000002
Chloroflexota
Dehalogenimonas alkenigignens [LFDV]
13952
13876
-
Ile
GAT
[ENA]
¡û
>W1611031978
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
314038
314114
+
Ile
GAT
[ENA]
¡û
>W1710617293
JGYD01000025
Chloroflexota
Dehalococcoides mccartyi [JGYD]
194500
194576
+
Ile
GAT
[ENA]
¡û
>W1710718345
LFDV01000002
Chloroflexota
Dehalogenimonas alkenigignens [LFDV]
13952
13876
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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