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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.162721 (61 seq.)
>W1710858276
LMBE01000015
Campylobacterota
Campylobacter fetus subsp. testudinum [LMBE]
523
599
+
Pseudo
CTC
[ENA]
¡û
>W1711023630
LRAM01000013
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi03/596 [LRAM]
99
175
+
Glu
CTC
[ENA]
¡û
>W1711029065
LRES01000013
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi9825 [LRES]
45332
45256
-
Glu
CTC
[ENA]
¡û
>W1711029099
LRET01000014
Campylobacterota
Campylobacter fetus subsp. venerealis cfvB10 [LRET]
541
617
+
Glu
CTC
[ENA]
¡û
>W1711029219
LREZ01000059
Campylobacterota
Campylobacter fetus subsp. venerealis [LREZ]
76
1
-
Pseudo
CTC
[ENA]
¡û
>W1711029243
LRFA01000011
Campylobacterota
Campylobacter fetus subsp. venerealis [LRFA]
45348
45272
-
Glu
CTC
[ENA]
¡û
>W1711056057
LRVK01000076
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi02/298 [LRVK]
99
175
+
Glu
CTC
[ENA]
¡û
>W1711485994
MKEI01000036
Campylobacterota
Campylobacter fetus subsp. fetus [MKEI]
2054
2130
+
Glu
CTC
[ENA]
¡û
>C171032294
CP014568
Campylobacterota
Campylobacter fetus subsp. venerealis 01/165 [CP014568]
646444
646520
+
Glu
CTC
-
¡û
>C005621
CP000487
Campylobacterota
Campylobacter fetus subsp. fetus 82-40 [CP000487]
610792
610868
+
Glu
CTC
[Ensembl]
¡û
>WENV183613884
OODU01015791
[OODU] human gut metagenome; human gut
180
256
+
Glu
CTC
[ENA]
¢þ
>C181212919
LS483431
Campylobacterota
Campylobacter fetus subsp. fetus NCTC10842 [LS483431]
604392
604468
+
Glu
CTC
-
¡û
>W09104903
AANR03000001
Campylobacterota
Campylobacter fetus subsp. fetus 82-40 [AANR]
610792
610868
+
Glu
CTC
[ENA]
¡û
>W09127815
ACLG01001182
Campylobacterota
Campylobacter fetus subsp. venerealis str. Azul-94 [ACLG]
5583
5507
-
Glu
CTC
[ENA]
¡û
>C141008963
CP006833
Campylobacterota
Campylobacter fetus subsp. testudinum 03-427 [CP006833]
613171
613247
+
Glu
CTC
-
¡û
>C141011406
CP006999
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi03/293 [CP006999]
611472
611548
+
Glu
CTC
[Ensembl]
¡û
>W1910574067
JPQC01000011
Campylobacterota
Campylobacter fetus subsp. venerealis 66Y [JPQC]
108
184
+
Glu
CTC
[ENA]
¡û
>W1810672825
QJTR01000030
Campylobacterota
Campylobacter fetus subsp. fetus HC1 [QJTR]
75
151
+
Glu
CTC
[ENA]
¡û
>W1810672868
QJTS01000030
Campylobacterota
Campylobacter fetus subsp. fetus HC2 [QJTS]
45443
45367
-
Glu
CTC
[ENA]
¡û
>C151037752
CP008808
Campylobacterota
Campylobacter fetus subsp. fetus 04/554 [CP008808]
607468
607544
+
Glu
CTC
[Ensembl]
¡û
>C151037794
CP008810
Campylobacterota
Campylobacter fetus subsp. venerealis 97/608 [CP008810]
644167
644243
+
Glu
CTC
[Ensembl]
¡û
>C151045938
CP009226
Campylobacterota
Campylobacter fetus subsp. testudinum pet-3 [CP009226]
623818
623894
+
Glu
CTC
[Ensembl]
¡û
>C151100032
HG004426
Campylobacterota
Campylobacter fetus subsp. venerealis str. 84-112 [HG004426]
640061
640137
+
Glu
CTC
[Ensembl]
¡û
>C161029995
CP010953
Campylobacterota
Campylobacter fetus subsp. testudinum Sp3 SP3 [CP010953]
626799
626875
+
Pseudo
CTC
-
¡û
>W1610550865
JYCP01000020
Campylobacterota
Campylobacter fetus subsp. fetus [JYCP]
495
571
+
Glu
CTC
[ENA]
¡û
>W1610596891
LELD01000014
Campylobacterota
Campylobacter fetus subsp. testudinum [LELD]
524
600
+
Pseudo
CTC
[ENA]
¡û
>W1610599390
LFLJ01000010
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLJ]
44671
44595
-
Pseudo
CTC
[ENA]
¡û
>W1610599430
LFLK01000008
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLK]
79165
79089
-
Pseudo
CTC
[ENA]
¡û
>W1610599453
LFLL01000010
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLL]
67509
67433
-
Pseudo
CTC
[ENA]
¡û
>W1610599511
LFLM01000085
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLM]
96
172
+
Pseudo
CTC
[ENA]
¡û
>W1610599539
LFLN01000012
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLN]
44610
44534
-
Pseudo
CTC
[ENA]
¡û
>W1610599583
LFLO01000018
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLO]
30535
30459
-
Pseudo
CTC
[ENA]
¡û
>W1610599635
LFLQ01000004
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLQ]
110343
110267
-
Pseudo
CTC
[ENA]
¡û
>W1610609213
LFXC01000016
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXC]
20
96
+
Pseudo
CTC
[ENA]
¡û
>W1610609251
LFXD01000009
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXD]
523
599
+
Pseudo
CTC
[ENA]
¡û
>W1610609294
LFXE01000045
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXE]
262
186
-
Pseudo
CTC
[ENA]
¡û
>W1610609328
LFXF01000011
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXF]
44478
44402
-
Pseudo
CTC
[ENA]
¡û
>W1610609366
LFXG01000012
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXG]
44476
44400
-
Pseudo
CTC
[ENA]
¡û
>W1610720622
LMBE01000015
Campylobacterota
Campylobacter fetus subsp. testudinum [LMBE]
523
599
+
Pseudo
CTC
[ENA]
¡û
>W1610871742
LRAM01000013
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi03/596 [LRAM]
99
175
+
Glu
CTC
[ENA]
¡û
>W1610877221
LRES01000013
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi9825 [LRES]
45332
45256
-
Glu
CTC
[ENA]
¡û
>W1610877255
LRET01000014
Campylobacterota
Campylobacter fetus subsp. venerealis cfvB10 [LRET]
541
617
+
Glu
CTC
[ENA]
¡û
>W1610877291
LREU01000012
Campylobacterota
Campylobacter fetus subsp. venerealis CCUG 33872 [LREU]
20
96
+
Glu
CTC
[ENA]
¡û
>W1610877372
LREW01000013
Campylobacterota
Campylobacter fetus subsp. venerealis LMG 6570 = CCUG 33900 [LREW]
107
183
+
Glu
CTC
[ENA]
¡û
>W1610877487
LREZ01000059
Campylobacterota
Campylobacter fetus subsp. venerealis [LREZ]
76
1
-
Pseudo
CTC
[ENA]
¡û
>W1610877511
LRFA01000011
Campylobacterota
Campylobacter fetus subsp. venerealis [LRFA]
45348
45272
-
Glu
CTC
[ENA]
¡û
>W1610897103
LRVK01000076
Campylobacterota
Campylobacter fetus subsp. venerealis cfvi02/298 [LRVK]
99
175
+
Glu
CTC
[ENA]
¡û
>W1710660742
JYCP01000020
Campylobacterota
Campylobacter fetus subsp. fetus [JYCP]
495
571
+
Glu
CTC
[ENA]
¡û
>W1710717896
LELD01000014
Campylobacterota
Campylobacter fetus subsp. testudinum [LELD]
524
600
+
Pseudo
CTC
[ENA]
¡û
>W1710720795
LFLJ01000010
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLJ]
44671
44595
-
Pseudo
CTC
[ENA]
¡û
>W1710720835
LFLK01000008
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLK]
79165
79089
-
Pseudo
CTC
[ENA]
¡û
>W1710720858
LFLL01000010
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLL]
67509
67433
-
Pseudo
CTC
[ENA]
¡û
>W1710720916
LFLM01000085
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLM]
96
172
+
Pseudo
CTC
[ENA]
¡û
>W1710720944
LFLN01000012
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLN]
44610
44534
-
Pseudo
CTC
[ENA]
¡û
>W1710720988
LFLO01000018
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLO]
30535
30459
-
Pseudo
CTC
[ENA]
¡û
>W1710721040
LFLQ01000004
Campylobacterota
Campylobacter fetus subsp. testudinum [LFLQ]
110343
110267
-
Pseudo
CTC
[ENA]
¡û
>W1710730500
LFXC01000016
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXC]
20
96
+
Pseudo
CTC
[ENA]
¡û
>W1710730538
LFXD01000009
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXD]
523
599
+
Pseudo
CTC
[ENA]
¡û
>W1710730581
LFXE01000045
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXE]
262
186
-
Pseudo
CTC
[ENA]
¡û
>W1710730615
LFXF01000011
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXF]
44478
44402
-
Pseudo
CTC
[ENA]
¡û
>W1710730653
LFXG01000012
Campylobacterota
Campylobacter fetus subsp. testudinum [LFXG]
44476
44400
-
Pseudo
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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