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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.162801 (107 seq.)
>C183001043
CP022099
Gammaproteobacteria
Vibrio anguillarum S3 4/9 [CP022099, CP022100]
1636977
1636901
-
Val
GAC
-
¡û
>C183001046
CP022101
Gammaproteobacteria
Vibrio anguillarum JLL237 [CP022101, CP022102]
1714668
1714592
-
Val
GAC
-
¡û
>C183001049
CP022103
Gammaproteobacteria
Vibrio anguillarum CNEVA NB11008 [CP022103, CP022104]
1752252
1752176
-
Val
GAC
-
¡û
>C183001301
CP022741
Gammaproteobacteria
Vibrio qinghaiensis Q67 [CP022741, CP022742]
1198078
1198154
+
Val
GAC
-
¡û
>C193000392
CP022468
Gammaproteobacteria
Vibrio anguillarum MHK3 [CP022468, CP022469]
1862378
1862302
-
Val
GAC
-
¡û
>W1930019732
MTIN01000103
Gammaproteobacteria
Vibrio sp. V01_P9A10T6 [MTIN]
16113
16189
+
Val
GAC
[ENA]
¡û
>W1930020784
NDHZ01000105
Gammaproteobacteria
Vibrio sp. V04_P4A5T148 [NDHZ]
137724
137648
-
Val
GAC
[ENA]
¡û
>W1930020786
NDIA01000173
Gammaproteobacteria
Vibrio sp. V05_P4A8T149 [NDIA]
2304
2380
+
Val
GAC
[ENA]
¡û
>W1930020789
NDIB01000291
Gammaproteobacteria
Vibrio sp. V06_P1A73T115 [NDIB]
2241
2317
+
Val
GAC
[ENA]
¡û
>W1930020792
NDIC01000186
Gammaproteobacteria
Vibrio sp. V07_P2A8T137 [NDIC]
1467
1543
+
Val
GAC
[ENA]
¡û
>W1930020795
NDID01000265
Gammaproteobacteria
Vibrio sp. V08_P9A1T1 [NDID]
19233
19157
-
Val
GAC
[ENA]
¡û
>W1930020797
NDIE01000010
Gammaproteobacteria
Vibrio sp. V09_P4A23P171 [NDIE]
20407
20483
+
Val
GAC
[ENA]
¡û
>W1930020801
NDIF01000310
Gammaproteobacteria
Vibrio sp. V10_P2A27P122 [NDIF]
16124
16048
-
Val
GAC
[ENA]
¡û
>W1930020803
NDIG01000077
Gammaproteobacteria
Vibrio sp. V11_P1A41T118 [NDIG]
14275
14351
+
Val
GAC
[ENA]
¡û
>W1930020805
NDIH01000016
Gammaproteobacteria
Vibrio sp. V12_P9A6T4 [NDIH]
62682
62606
-
Val
GAC
[ENA]
¡û
>W1930020807
NDII01000061
Gammaproteobacteria
Vibrio sp. V14_P6S14T42 [NDII]
33234
33158
-
Val
GAC
[ENA]
¡û
>W1930020813
NDIJ01000024
Gammaproteobacteria
Vibrio sp. V15_P4S5T153 [NDIJ]
968313
968237
-
Val
GAC
[ENA]
¡û
>W1930020816
NDIK01000018
Gammaproteobacteria
Vibrio sp. V17_P4S1T151 [NDIK]
17470
17394
-
Val
GAC
[ENA]
¡û
>W1930020823
NDIL01000087
Gammaproteobacteria
Vibrio sp. V18_P1S4T112 [NDIL]
2919
2995
+
Val
GAC
[ENA]
¡û
>W1930020825
NDIM01000150
Gammaproteobacteria
Vibrio sp. V19_P1S1T109 [NDIM]
1808
1884
+
Val
GAC
[ENA]
¡û
>W1930020827
NDIN01000141
Gammaproteobacteria
Vibrio sp. V20_P4S3T152 [NDIN]
21901
21825
-
Val
GAC
[ENA]
¡û
>W1930020830
NDIO01000092
Gammaproteobacteria
Vibrio sp. V03_P4A6T147 [NDIO]
5480
5404
-
Val
GAC
[ENA]
¡û
>W1930037005
PXJL01000172
Gammaproteobacteria
Vibrio sp. V02_P2A34T13 [PXJL]
4166
4090
-
Val
GAC
[ENA]
¡û
>W1830014150
QOUW01000028
Gammaproteobacteria
Vibrio harveyi CAIM 1508 [QOUW]
3620
3544
-
Val
GAC
[ENA]
¡û
>W2030025253
MTIN01000103
Gammaproteobacteria
Vibrio sp. V01_P9A10T6 [MTIN]
16113
16189
+
Val
GAC
[ENA]
¡û
>W2030025760
NDHZ01000105
Gammaproteobacteria
Vibrio sp. V04_P4A5T148 [NDHZ]
137724
137648
-
Val
GAC
[ENA]
¡û
>W2030025762
NDIA01000173
Gammaproteobacteria
Vibrio sp. V05_P4A8T149 [NDIA]
2304
2380
+
Val
GAC
[ENA]
¡û
>W2030025765
NDIB01000291
Gammaproteobacteria
Vibrio sp. V06_P1A73T115 [NDIB]
2241
2317
+
Val
GAC
[ENA]
¡û
>W2030025768
NDIC01000186
Gammaproteobacteria
Vibrio sp. V07_P2A8T137 [NDIC]
1467
1543
+
Val
GAC
[ENA]
¡û
>W2030025771
NDID01000265
Gammaproteobacteria
Vibrio sp. V08_P9A1T1 [NDID]
19233
19157
-
Val
GAC
[ENA]
¡û
>W2030025773
NDIE01000010
Gammaproteobacteria
Vibrio sp. V09_P4A23P171 [NDIE]
20407
20483
+
Val
GAC
[ENA]
¡û
>W2030025777
NDIF01000310
Gammaproteobacteria
Vibrio sp. V10_P2A27P122 [NDIF]
16124
16048
-
Val
GAC
[ENA]
¡û
>W2030025779
NDIG01000077
Gammaproteobacteria
Vibrio sp. V11_P1A41T118 [NDIG]
14275
14351
+
Val
GAC
[ENA]
¡û
>W2030025781
NDIH01000016
Gammaproteobacteria
Vibrio sp. V12_P9A6T4 [NDIH]
62682
62606
-
Val
GAC
[ENA]
¡û
>W2030025783
NDII01000061
Gammaproteobacteria
Vibrio sp. V14_P6S14T42 [NDII]
33234
33158
-
Val
GAC
[ENA]
¡û
>W2030025789
NDIJ01000024
Gammaproteobacteria
Vibrio sp. V15_P4S5T153 [NDIJ]
968313
968237
-
Val
GAC
[ENA]
¡û
>W2030025792
NDIK01000018
Gammaproteobacteria
Vibrio sp. V17_P4S1T151 [NDIK]
17470
17394
-
Val
GAC
[ENA]
¡û
>W2030025799
NDIL01000087
Gammaproteobacteria
Vibrio sp. V18_P1S4T112 [NDIL]
2919
2995
+
Val
GAC
[ENA]
¡û
>W2030025801
NDIM01000150
Gammaproteobacteria
Vibrio sp. V19_P1S1T109 [NDIM]
1808
1884
+
Val
GAC
[ENA]
¡û
>W2030025803
NDIN01000141
Gammaproteobacteria
Vibrio sp. V20_P4S3T152 [NDIN]
21901
21825
-
Val
GAC
[ENA]
¡û
>W2030025806
NDIO01000092
Gammaproteobacteria
Vibrio sp. V03_P4A6T147 [NDIO]
5480
5404
-
Val
GAC
[ENA]
¡û
>W2030030932
PXJL01000172
Gammaproteobacteria
Vibrio sp. V02_P2A34T13 [PXJL]
4166
4090
-
Val
GAC
[ENA]
¡û
>W2030041051
SJSX01000002
Gammaproteobacteria
Aliivibrio fischeri FQ-A001 [SJSX]
1063300
1063376
+
Val
GAC
[ENA]
¡û
>W2030044936
UGPJ01000001
Gammaproteobacteria
Vibrio anguillarum NCTC12159 [UGPJ]
3048297
3048221
-
Val
GAC
[ENA]
¡û
>W2030049824
VHSK01000001
Gammaproteobacteria
Vibrio sp. B1-2 [VHSK]
115027
115103
+
Val
GAC
[ENA]
¡û
>W2030049827
VHSL01000005
Gammaproteobacteria
Vibrio sp. B4-6 [VHSL]
59757
59681
-
Val
GAC
[ENA]
¡û
>W2030049829
VHSM01000006
Gammaproteobacteria
Vibrio sp. B4-12 [VHSM]
195267
195191
-
Val
GAC
[ENA]
¡û
>W2030049832
VHSN01000006
Gammaproteobacteria
Vibrio sp. B7 [VHSN]
195267
195191
-
Val
GAC
[ENA]
¡û
>W2030049835
VHSO01000006
Gammaproteobacteria
Vibrio sp. B8-1 [VHSO]
88043
88119
+
Val
GAC
[ENA]
¡û
>W2030049842
VHSU01000004
Gammaproteobacteria
2-2(8) [VHSU]
111375
111451
+
Val
GAC
[ENA]
¡û
>W2030049845
VHSW01000001
Gammaproteobacteria
3-2(1) [VHSW]
246725
246649
-
Val
GAC
[ENA]
¡û
>W2030052351
VTYO01000001
Gammaproteobacteria
Vibrio anguillarum 00-84-1 [VTYO]
44588
44664
+
Val
GAC
[ENA]
¡û
>W2030069774
WXVZ01000201
Gammaproteobacteria
Vibrio sp. V22_P2S10T140 [WXVZ]
13431
13507
+
Val
GAC
[ENA]
¡û
>W2030069776
WXWA01000012
Gammaproteobacteria
Vibrio sp. V23_P3S9T160 [WXWA]
25062
25138
+
Val
GAC
[ENA]
¡û
>W2030069778
WXWB01000083
Gammaproteobacteria
Vibrio sp. V24_P1S3T111 [WXWB]
2628
2704
+
Val
GAC
[ENA]
¡û
>W2030069780
WXWC01000209
Gammaproteobacteria
Vibrio sp. V25_P4S6T154 [WXWC]
26213
26289
+
Val
GAC
[ENA]
¡û
>W1530023986
JTLH01000170
Gammaproteobacteria
Vibrio sp. ZOR0018 [JTLH]
56714
56790
+
Val
GAC
[ENA]
¡û
>C213006485
HG992742
Gammaproteobacteria
Vibrio sp. B1ASS3 [HG992742, HG992743]
2216740
2216664
-
Val
GAC
-
¡û
>W2130007502
CAJDZN010000046
Gammaproteobacteria
Vibrio sp. B1ASS3 [CAJDZN]
46280
46356
+
Val
GAC
[ENA]
¡û
>W2130007529
CAJFAE010000021
Gammaproteobacteria
Vibrio jasicida [CAJFAE]
10212
10136
-
Val
GAC
[ENA]
¡û
>W2130008293
CAJIMV010000001
Gammaproteobacteria
Vibrio sp. B1ASS3 [CAJIMV]
2216740
2216664
-
Val
GAC
[ENA]
¡û
>W2130026921
JAEOBB010000005
Gammaproteobacteria
Vibrio anguillarum MCCC 1H00003 [JAEOBB]
195576
195500
-
Val
GAC
[ENA]
¡û
>W2130026925
JAEOBC010000002
Gammaproteobacteria
Vibrio anguillarum MCCC 1H00007 [JAEOBC]
453461
453537
+
Val
GAC
[ENA]
¡û
>W2130035819
JAHGUI010000054
Gammaproteobacteria
Vibrio anguillarum 90-11-286 [JAHGUI]
17713
17789
+
Val
GAC
[ENA]
¡û
>W2130035855
JAHGUN010000127
Gammaproteobacteria
Vibrio anguillarum 4299 [JAHGUN]
15156
15080
-
Val
GAC
[ENA]
¡û
>W2130035863
JAHGUP010000017
Gammaproteobacteria
Vibrio anguillarum DSM 21597 [JAHGUP]
195371
195295
-
Val
GAC
[ENA]
¡û
>W2130035870
JAHGUR010000004
Gammaproteobacteria
Vibrio anguillarum PF4 [JAHGUR]
467829
467905
+
Val
GAC
[ENA]
¡û
>W2130035873
JAHGUS010000003
Gammaproteobacteria
Vibrio anguillarum S2 2/9 [JAHGUS]
225534
225458
-
Val
GAC
[ENA]
¡û
>W2130043601
PUIE01000410
Gammaproteobacteria
Vibrio anguillarum V.a.150312-1/1 [PUIE]
58
134
+
Val
GAC
[ENA]
¡û
>W2130043836
RDOK01000003
Gammaproteobacteria
Vibrio anguillarum 090903-1/2B [RDOK]
13945
14021
+
Val
GAC
[ENA]
¡û
>W2130043854
RDOL01000994
Gammaproteobacteria
Vibrio anguillarum 090602-1/12 [RDOL]
58
134
+
Val
GAC
[ENA]
¡û
>W2130043865
RDOO01000032
Gammaproteobacteria
Vibrio anguillarum 910718-2/1A [RDOO]
892
968
+
Val
GAC
[ENA]
¡û
>W2130043870
RDOP01000018
Gammaproteobacteria
Vibrio anguillarum 980617-1/3A [RDOP]
893
969
+
Val
GAC
[ENA]
¡û
>W2130043894
RDOU01000707
Gammaproteobacteria
Vibrio anguillarum 171004-1/1 [RDOU]
606
682
+
Val
GAC
[ENA]
¡û
>W2130043901
RDOW01000023
Gammaproteobacteria
Vibrio anguillarum 100819-1/4A [RDOW]
195003
194927
-
Val
GAC
[ENA]
¡û
>W2130043916
RDOY01000009
Gammaproteobacteria
Vibrio anguillarum 100719-1/3A [RDOY]
202265
202189
-
Val
GAC
[ENA]
¡û
>W2130043924
RDPA01000017
Gammaproteobacteria
Vibrio anguillarum 090710-1/17A [RDPA]
250698
250622
-
Val
GAC
[ENA]
¡û
>W2130043930
RDPB01000023
Gammaproteobacteria
Vibrio anguillarum 090519-1/13A [RDPB]
13685
13761
+
Val
GAC
[ENA]
¡û
>W2130043944
RDPC01000001
Gammaproteobacteria
Vibrio anguillarum 060721-1/1B [RDPC]
892
968
+
Val
GAC
[ENA]
¡û
>W2130043955
RDPE01000041
Gammaproteobacteria
Vibrio anguillarum 090602-1/6B [RDPE]
194996
194920
-
Val
GAC
[ENA]
¡û
>W2130043957
RDPF01000004
Gammaproteobacteria
Vibrio anguillarum 090707-1/1A [RDPF]
195010
194934
-
Val
GAC
[ENA]
¡û
>W2130043966
RDPH01000004
Gammaproteobacteria
Vibrio anguillarum 840613-2/1 [RDPH]
892
968
+
Val
GAC
[ENA]
¡û
>W2130043969
RDPI01000002
Gammaproteobacteria
Vibrio anguillarum 040915-1/1B [RDPI]
247405
247329
-
Val
GAC
[ENA]
¡û
>W2130043974
RDPJ01000029
Gammaproteobacteria
Vibrio anguillarum 040809-1/2A [RDPJ]
254688
254612
-
Val
GAC
[ENA]
¡û
>W2130043993
RDPM01001154
Gammaproteobacteria
Vibrio anguillarum 030905-1/1A [RDPM]
58
134
+
Val
GAC
[ENA]
¡û
>W2130044007
RDPQ01000579
Gammaproteobacteria
Vibrio anguillarum 171124-1/1A [RDPQ]
162
86
-
Val
GAC
[ENA]
¡û
>W2130044012
RDPR01000300
Gammaproteobacteria
Vibrio anguillarum 131108-2/1 [RDPR]
58
134
+
Val
GAC
[ENA]
¡û
>W2130044014
RDPS01000001
Gammaproteobacteria
Vibrio anguillarum 090819-1/28A [RDPS]
260624
260700
+
Val
GAC
[ENA]
¡û
>W2130044027
RDQB01000011
Gammaproteobacteria
Vibrio anguillarum 4070 E [RDQB]
118816
118892
+
Val
GAC
[ENA]
¡û
>W2130044029
RDQC01000002
Gammaproteobacteria
Vibrio anguillarum 150811-1/228H [RDQC]
261618
261542
-
Val
GAC
[ENA]
¡û
>W2130044044
RDQD01000007
Gammaproteobacteria
Vibrio anguillarum 090707-1/2A [RDQD]
194954
194878
-
Val
GAC
[ENA]
¡û
>W2130044093
SCLB01000007
Gammaproteobacteria
ATCC 43306 (1173/1) [SCLB]
197216
197140
-
Val
GAC
[ENA]
¡û
>W2130044098
SCLC01000001
Gammaproteobacteria
Vibrio anguillarum 850617-1/1 [SCLC]
245331
245255
-
Val
GAC
[ENA]
¡û
>C243002231
CP045070
Gammaproteobacteria
Vibrio harveyi WXL538 [CP045070, CP045071]
1405615
1405691
+
Val
GAC
-
¡û
>W11301289
AEZA01000016
Gammaproteobacteria
Vibrio anguillarum 96F [AEZA]
518323
518399
+
Val
GAC
[ENA]
¡û
>W11301293
AEZC01000079
Gammaproteobacteria
Vibrio ordalii ATCC 33509 [AEZC]
2425
2501
+
Val
GAC
[ENA]
¡û
>C163000419
CP011460
Gammaproteobacteria
Vibrio anguillarum [CP011460]
1653965
1653889
-
Val
GAC
[Ensembl]
¡û
>W123001681
AJYR01000102
Gammaproteobacteria
Vibrio ordalii FF-167 [AJYR]
19004
18928
-
Val
GAC
[ENA]
¡û
>W123001683
AJYS01000008
Gammaproteobacteria
Vibrio ordalii FS-238 [AJYS]
247331
247255
-
Val
GAC
[ENA]
¡û
>W123001685
AJYT01000181
Gammaproteobacteria
Vibrio anguillarum FF-93 [AJYT]
75258
75182
-
Val
GAC
[ENA]
¡û
>W123001687
AJYU01000033
Gammaproteobacteria
Vibrio anguillarum FS-144 [AJYU]
44888
44964
+
Val
GAC
[ENA]
¡û
>W123001691
AJYV01000170
Gammaproteobacteria
Vibrio anguillarum 12B09 [AJYV]
4062
3986
-
Val
GAC
[ENA]
¡û
>W1630010832
LHBC01000002
Gammaproteobacteria
Vibrio parahaemolyticus [LHBC]
7631
7555
-
Val
GAC
[ENA]
¡û
>W1730013266
LHBC01000002
Gammaproteobacteria
Vibrio parahaemolyticus [LHBC]
7631
7555
-
Val
GAC
[ENA]
¡û
>W1730029326
MIQZ01000003
Gammaproteobacteria
Vibrio parahaemolyticus [MIQZ]
7670
7594
-
Val
GAC
[ENA]
¡û
>W1730029373
MISS01000058
Gammaproteobacteria
Vibrio parahaemolyticus [MISS]
441241
441317
+
Val
GAC
[ENA]
¡û
>W1730031560
MNLD01000006
Gammaproteobacteria
Vibrio anguillarum [MNLD]
15157
15081
-
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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