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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.162958 (17 seq.)
>C007985
CP000612
Bacillota
Desulforamulus reducens MI-1 [CP000612]
25960
26036
+
Arg
CCT
[Ensembl]
¡û
>WENV170001400
AGFS01029492
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
149
73
-
Arg
CCT
[ENA]
¡û
>WENV170658772
JUEG02000521
[JUEG] rock porewater metagenome; Opalinus Clay rock BIC-A1 borehole
7080
7004
-
Arg
CCT
[ENA]
¡û
>W09105183
AAOP01000047
Bacillota
Desulforamulus reducens MI-1 [AAOP]
12127
12051
-
Arg
CCT
[ENA]
¡û
>W09108848
ABTQ01000020
Bacillota
Desulfofarcimen acetoxidans DSM 771 [ABTQ]
46042
45966
-
Arg
CCT
[ENA]
¡û
>W1910004985
AWVY01000052
Bacillota
Desulfotomaculum aquiferis Bs105 [AWVY]
170970
170894
-
Arg
CCT
[ENA]
¡û
>C151038557
CP008852
Bacillota
Pelosinus sp. UFO1 [CP008852]
5048615
5048691
+
Arg
CCT
[Ensembl]
¡û
>C151074861
CP010978
Bacillota
Pelosinus fermentans JBW45 [CP010978]
5108663
5108587
-
Arg
CCT
[Ensembl]
¡û
>W2010073331
AWVY01000052
Bacillota
Desulfotomaculum aquiferis Bs105 [AWVY]
170970
170894
-
Arg
CCT
[ENA]
¡û
>C10104826
CP001720
Bacillota
Desulfofarcimen acetoxidans DSM 771 [CP001720]
4513838
4513762
-
Arg
CCT
[Ensembl]
¡û
>WENV11101472
AGFS01029492
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
149
73
-
Arg
CCT
[ENA]
¡û
>C11107312
CP002780
Bacillota
Desulforamulus ruminis DSM 2154 [CP002780]
30384
30460
+
Arg
CCT
[Ensembl]
¡û
>W11161320
AFGF01000081
Bacillota
Acetonema longum DSM 6540 [AFGF]
11371
11295
-
Arg
CCT
[ENA]
¡û
>W121101652
AKVM01000071
Bacillota
Pelosinus fermentans A11 [AKVM]
64567
64491
-
Arg
CCT
[ENA]
¡û
>W121101721
AKVN01000031
Bacillota
Pelosinus fermentans DSM 17108 [AKVN]
36754
36678
-
Arg
CCT
[ENA]
¡û
>W1710526293
FNKF01000002
Bacillota
Pelosinus fermentans [FNKF]
4934409
4934333
-
Arg
CCT
[ENA]
¡û
>W1710590045
FRAR01000011
Bacillota
Desulforamulus aeronauticus DSM 10349 [FRAR]
9215
9291
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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