This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.162992 (71 seq.)
>W1711256832
LYSY01000001
Alphaproteobacteria
Rhodospirillales bacterium BBD 1991-14 [LYSY]
808304
808228
-
Asp
GTC
[ENA]
¡û
>W1711391667
MELY01000002
Alphaproteobacteria
Alphaproteobacteria bacterium GWA2_41_27 [MELY]
8510
8434
-
Asp
GTC
[ENA]
¡û
>W1711391764
MEMA01000050
Alphaproteobacteria
Alphaproteobacteria bacterium GWC2_42_16 [MEMA]
7737
7661
-
Asp
GTC
[ENA]
¡û
>W131186375
ARWB01000001
Alphaproteobacteria
Methylopila sp. M107 [ARWB]
1633054
1632978
-
Asp
GTC
[ENA]
¡û
>W131186617
ARWG01000001
Alphaproteobacteria
Hyphomicrobium sp. 99 [ARWG]
1744426
1744350
-
Asp
GTC
[ENA]
¡û
>C171072669
CP018095
Alphaproteobacteria
Chelatococcus daeguensis TAD1 [CP018095]
1913558
1913634
+
Asp
GTC
-
¡û
>WENV001496
AACY020042218
Marine microbial communities from Global Ocean Sampling (GOS)
738
662
-
Asp
GTC
[ENA]
>WENV180022390
FTGD01000514
[FTGD] metagenome; soil
489
564
+
Asp
GTC
[ENA]
¡û
>WENV180022461
FTGG01000432
[FTGG] metagenome; soil
3037
2962
-
Asp
GTC
[ENA]
¡û
>WENV180030276
FTJL01533116
[FTJL] metagenome; soil
32
107
+
Asp
GTC
[ENA]
¡û
>WENV180327629
OBKT01328232
[OBKT] soil metagenome; soil
56
132
+
Asp
GTC
[ENA]
¡û
>WENV181165946
OEIS01314256
[OEIS] soil metagenome; soil
190
114
-
Asp
GTC
[ENA]
¡û
>W141278828
JAFV01000001
Alphaproteobacteria
Methylopila sp. 73B [JAFV]
1792915
1792839
-
Asp
GTC
[ENA]
¡û
>WENV183748824
PPFU01085616
[PPFU] hypolithon metagenome; Antarctic Hypolithon
1040
967
-
Asp
GTC
[ENA]
¡û
>ENV08002556
ABPX01004270
microbial mat metagenome; Guerrero Negro Hypersaline Mat 09; altitude 310m AMSL; sample depth 1m below water level, 22-34mm depth into the mat
816
740
-
Asp
GTC
[ENA]
¡û
>WENV170652493
JRYH01004851
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
555
631
+
Asp
GTC
[ENA]
¡û
>WENV170959832
MKWU01008910
[MKWU] sponge metagenome;
6963
6887
-
Asp
GTC
[ENA]
¡û
>WENV170961109
MKWU01082561
[MKWU] sponge metagenome;
454
378
-
Asp
GTC
[ENA]
¡û
>WENV170964421
MRWG01010777
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
1443
1367
-
Asp
GTC
[ENA]
¡û
>WENV170964607
MRWG01023164
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
104
180
+
Asp
GTC
[ENA]
¡û
>C191000426
AP017626
Alphaproteobacteria
Pleomorphomonas sp. SM30 [AP017626]
416504
416428
-
Asp
GTC
-
¡û
>W1910006607
BAUX01000002
Alphaproteobacteria
Methylopila sp. Yamaguchi [BAUX]
385155
385079
-
Asp
GTC
[ENA]
¡û
>WENV002476
AACY020069486
Marine microbial communities from Global Ocean Sampling (GOS)
410
488
+
Asp
GTC
[ENA]
>WENV025617
AACY020901213
Marine microbial communities from Global Ocean Sampling (GOS)
188
266
+
Asp
GTC
[ENA]
>W1910547476
FZNU01000008
Alphaproteobacteria
Tistlia consotensis DSM 21585 [FZNU]
73696
73620
-
Asp
GTC
[ENA]
¡û
>W1911708723
QOZR01000001
Alphaproteobacteria
Rhodospirillaceae bacterium SYSU D60014 [QOZR]
441579
441655
+
Asp
GTC
[ENA]
¡û
>W1911765963
QXDF01000001
Alphaproteobacteria
Dichotomicrobium thermohalophilum DSM 5002 [QXDF]
1294134
1294210
+
Asp
GTC
[ENA]
¡û
>W1810368591
PVZS01000008
Alphaproteobacteria
Alsobacter soli SH9 [PVZS]
58220
58296
+
Asp
GTC
[ENA]
¡û
>WENV028372
AACY021117302
Marine microbial communities from Global Ocean Sampling (GOS)
605
681
+
Asp
GTC
[ENA]
>W2010074965
BAUX01000002
Alphaproteobacteria
Methylopila sp. Yamaguchi [BAUX]
385155
385079
-
Asp
GTC
[ENA]
¡û
>W2010429237
FZNU01000008
Alphaproteobacteria
Tistlia consotensis DSM 21585 [FZNU]
73696
73620
-
Asp
GTC
[ENA]
¡û
>WENV030437
AACY021283092
Marine microbial communities from Global Ocean Sampling (GOS)
584
506
-
Asp
GTC
[ENA]
>W2010489486
JAAIYP010000035
Alphaproteobacteria
Magnetospirillum aberrantis SpK [JAAIYP]
39471
39395
-
Asp
GTC
[ENA]
¡û
>W2010715938
JACHXA010000005
Alphaproteobacteria
Limibacillus halophilus CECT 8803 [JACHXA]
184372
184448
+
Asp
GTC
[ENA]
¡û
>W2010724890
JACIDR010000006
Alphaproteobacteria
Hansschlegelia beijingensis DSM 25481 [JACIDR]
22811
22735
-
Asp
GTC
[ENA]
¡û
>W2011281861
QOZR01000001
Alphaproteobacteria
Rhodospirillaceae bacterium SYSU D60014 [QOZR]
441579
441655
+
Asp
GTC
[ENA]
¡û
>W2011324406
QXDF01000001
Alphaproteobacteria
Dichotomicrobium thermohalophilum DSM 5002 [QXDF]
1294134
1294210
+
Asp
GTC
[ENA]
¡û
>W2011506128
RYFI01000003
Alphaproteobacteria
Hansschlegelia zhihuaiae S 113 [RYFI]
211640
211564
-
Asp
GTC
[ENA]
¡û
>W2011602694
SIUB01000012
Alphaproteobacteria
Hansschlegelia sp. Dub [SIUB]
4014
4090
+
Asp
GTC
[ENA]
¡û
>W2011627416
SMAK01000004
Alphaproteobacteria
Tepidamorphus gemmatus DSM 19345 [SMAK]
37100
37024
-
Asp
GTC
[ENA]
¡û
>W2110050766
BMZS01000003
Alphaproteobacteria
Thalassobaculum fulvum KCTC 42651 [BMZS]
566264
566188
-
Asp
GTC
[ENA]
¡û
>WENV033019
AACY021493938
Marine microbial communities from Global Ocean Sampling (GOS)
161
85
-
Asp
GTC
[ENA]
>W2110459571
JAFBCY010000003
Alphaproteobacteria
Methylopila capsulata DSM 6130 [JAFBCY]
43230
43154
-
Asp
GTC
[ENA]
¡û
>W2110591667
JAHBRZ010000001
Alphaproteobacteria
Chelatococcus composti DSM 101465 [JAHBRZ]
3092104
3092180
+
Asp
GTC
[ENA]
¡û
>C211095247
CP053923
Alphaproteobacteria
Defluviicoccus vanus Ben 114 [CP053923]
3632923
3632999
+
Asp
GTC
-
¡û
>C211115625
CP058214
Alphaproteobacteria
Alphaproteobacteria bacterium R1DC25 [CP058214]
4263051
4263127
+
Asp
GTC
-
¡û
>C211388823
CP081869
Alphaproteobacteria
Chenggangzhangella methanolivorans CHL1 [CP081869]
4872748
4872824
+
Asp
GTC
-
¡û
>WENV034704
AACY021635162
Marine microbial communities from Global Ocean Sampling (GOS)
336
260
-
Asp
GTC
[ENA]
>WENV035059
AACY021666670
Marine microbial communities from Global Ocean Sampling (GOS)
850
774
-
Asp
GTC
[ENA]
>C241174631
CP058705
Alphaproteobacteria
Defluviicoccus sp. [CP058705]
2026983
2026907
-
Asp
GTC
-
¡û
>W2310022661
BSFF01000003
Alphaproteobacteria
Methylopila capsulata VKM B-1606 [BSFF]
43262
43186
-
Asp
GTC
[ENA]
¡û
>W2310022873
BSFK01000007
Alphaproteobacteria
Methylopila jiangsuensis VKM B-2555 [BSFK]
116183
116259
+
Asp
GTC
[ENA]
¡û
>W2310022897
BSFL01000001
Alphaproteobacteria
Methylopila turkensis VKM B-2748 [BSFL]
81492
81568
+
Asp
GTC
[ENA]
¡û
>W2310026368
BSPM01000008
Alphaproteobacteria
Oharaeibacter diazotrophicus NBRC 111955 [BSPM]
641271
641195
-
Asp
GTC
[ENA]
¡û
>WENV038833
AACY021964439
Marine microbial communities from Global Ocean Sampling (GOS)
838
762
-
Asp
GTC
[ENA]
>WENV038945
AACY021973236
Marine microbial communities from Global Ocean Sampling (GOS)
553
631
+
Asp
GTC
[ENA]
>WENV039500
AACY022013739
Marine microbial communities from Global Ocean Sampling (GOS)
752
674
-
Asp
GTC
[ENA]
>WENV040397
AACY022081077
Marine microbial communities from Global Ocean Sampling (GOS)
709
633
-
Asp
GTC
[ENA]
>W1510741118
CYHC01000002
Alphaproteobacteria
Chelatococcus sambhunathii DSM 18167 [CYHC]
513241
513165
-
Asp
GTC
[ENA]
¡û
>WENV042180
AACY022216992
Marine microbial communities from Global Ocean Sampling (GOS)
750
828
+
Asp
GTC
[ENA]
>WENV044712
AACY022446509
Marine microbial communities from Global Ocean Sampling (GOS)
558
480
-
Asp
GTC
[ENA]
>WENV046239
AACY022583052
Marine microbial communities from Global Ocean Sampling (GOS)
58
136
+
Asp
GTC
[ENA]
>WENV046359
AACY022591127
Marine microbial communities from Global Ocean Sampling (GOS)
237
161
-
Asp
GTC
[ENA]
>WENV048021
AACY022706317
Marine microbial communities from Global Ocean Sampling (GOS)
242
320
+
Asp
GTC
[ENA]
>WENV048555
AACY022738472
Marine microbial communities from Global Ocean Sampling (GOS)
589
511
-
Asp
GTC
[ENA]
>WENV049916
AACY022832530
Marine microbial communities from Global Ocean Sampling (GOS)
31
109
+
Asp
GTC
[ENA]
>WENV051483
AACY022959023
Marine microbial communities from Global Ocean Sampling (GOS)
279
201
-
Asp
GTC
[ENA]
>WENV060866
AACY023413075
Marine microbial communities from Global Ocean Sampling (GOS)
635
559
-
Asp
GTC
[ENA]
>WENV007339
AACY020192190
Marine microbial communities from Global Ocean Sampling (GOS)
2393
2471
+
Asp
GTC
[ENA]
>WENV000763
AACY020024560
Marine microbial communities from Global Ocean Sampling (GOS)
565
641
+
Asp
GTC
[ENA]
>W1710607245
FWZX01000008
Alphaproteobacteria
Tistlia consotensis [FWZX]
106243
106319
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK