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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.163083 (13 seq.)
>W131241487
BARX01000010
Gammaproteobacteria
Agarivorans albus MKT 106 [BARX]
93359
93435
+
Val
GAC
[ENA]
¡û
>WENV170024168
BCQL01026533
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
673
597
-
Val
GAC
[ENA]
¡û
>W1910178269
BJEQ01000006
Gammaproteobacteria
Agarivorans sp. Toyoura001 [BJEQ]
101539
101615
+
Val
GAC
[ENA]
¡û
>W2010091608
BJEQ01000006
Gammaproteobacteria
Agarivorans sp. Toyoura001 [BJEQ]
101539
101615
+
Val
GAC
[ENA]
¡û
>W2011858175
UNRE01000008
Gammaproteobacteria
Agarivorans sp. Alg241-V36 [UNRE]
122118
122042
-
Val
GAC
[ENA]
¡û
>W2012330213
WHRY01000007
Gammaproteobacteria
Agarivorans sp. B2Z047 [WHRY]
222290
222214
-
Val
GAC
[ENA]
¡û
>W2110016244
BLPI01000001
Gammaproteobacteria
Agarivorans litoreus NBRC 110444 [BLPI]
4296646
4296570
-
Val
GAC
[ENA]
¡û
>W2110020772
BMDY01000001
Gammaproteobacteria
Agarivorans gilvus CGMCC 1.10131 [BMDY]
17136
17060
-
Val
GAC
[ENA]
¡û
>C211007613
AP023032
Gammaproteobacteria
Agarivorans albus JCM 21469 [AP023032]
2383012
2383088
+
Val
GAC
-
¡û
>C211007708
AP023033
Gammaproteobacteria
Agarivorans aestuarii KCTC 32543 [AP023033]
2345777
2345853
+
Val
GAC
-
¡û
>C231249173
CP088080
Gammaproteobacteria
Agarivorans sp. B2Z047 [CP088080]
2918523
2918599
+
Val
GAC
-
¡û
>C231370452
CP096670
Gammaproteobacteria
Agarivorans sp. TSD2052 [CP096670]
2158744
2158668
-
Val
GAC
-
¡û
>C161049699
CP013021
Gammaproteobacteria
Agarivorans gilvus WH0801 [CP013021]
444384
444308
-
Val
GAC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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