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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.163413 (59 seq.)
>W131162976
AQZJ01000011
Actinomycetota
actinobacterium SCGC AAA028-A23 [AQZJ]
8153
8079
-
Arg
TCT
[ENA]
¡û
>W131183102
ARRO01000002
Actinomycetota
actinobacterium SCGC AAA027-M14 [ARRO]
125665
125589
-
Arg
TCT
[ENA]
¡û
>WENV180110690
OAPN01004279
[OAPN] marine metagenome; 2011
520
594
+
Arg
TCT
[ENA]
¢þ
>WENV180111562
OAPN01109361
[OAPN] marine metagenome; 2011
190
116
-
Arg
TCT
[ENA]
¢þ
>WENV180357414
OBNN01008277
[OBNN] marine metagenome; Coastal water
507
433
-
Arg
TCT
[ENA]
¢þ
>WENV180377189
OBON01002433
[OBON] marine metagenome; sea water
795
871
+
Arg
TCT
[ENA]
¢þ
>WENV180377367
OBON01015088
[OBON] marine metagenome; sea water
594
520
-
Arg
TCT
[ENA]
¢þ
>WENV181367125
OFPU01000396
[OFPU] freshwater metagenome; Freshwater Lake
795
721
-
Arg
TCT
[ENA]
¢þ
>WENV181367353
OFQB01000015
[OFQB] freshwater metagenome; Freshwater Lake
20925
20999
+
Arg
TCT
[ENA]
¢þ
>WENV181367542
OFQB01009471
[OFQB] freshwater metagenome; Freshwater Lake
204
278
+
Arg
TCT
[ENA]
¢þ
>WENV181367707
OFQC01002895
[OFQC] freshwater metagenome; Freshwater Lake
128
54
-
Arg
TCT
[ENA]
¢þ
>WENV181368450
OFQL01005936
[OFQL] freshwater metagenome; Freshwater Lake
326
252
-
Arg
TCT
[ENA]
¢þ
>WENV181368807
OFQN01000773
[OFQN] freshwater metagenome; Freshwater Lake
2244
2318
+
Arg
TCT
[ENA]
¢þ
>WENV181369485
OFQP01004152
[OFQP] freshwater metagenome; Freshwater Lake
689
763
+
Arg
TCT
[ENA]
¢þ
>WENV181369938
OFQR01002662
[OFQR] freshwater metagenome; Freshwater Lake
748
822
+
Arg
TCT
[ENA]
¢þ
>WENV181370358
OFQS01005302
[OFQS] freshwater metagenome; Freshwater Lake
546
620
+
Arg
TCT
[ENA]
¢þ
>WENV181370720
OFQT01005507
[OFQT] freshwater metagenome; Freshwater Lake
184
110
-
Arg
TCT
[ENA]
¢þ
>WENV181384443
OFRI01001089
[OFRI] wastewater metagenome; Exp Tend VB 90WW
6052
6126
+
Arg
TCT
[ENA]
¢þ
>WENV181395752
OFSB01001640
[OFSB] freshwater metagenome; Freshwater Lake
882
808
-
Arg
TCT
[ENA]
¢þ
>WENV181400613
OFSF01013322
[OFSF] wastewater metagenome; Exp Tend VB 100WW
614
540
-
Arg
TCT
[ENA]
¢þ
>W141170877
AXZA01000017
Actinomycetota
actinobacterium SCGC AAA044-D11 [AXZA]
17641
17565
-
Arg
TCT
[ENA]
¡û
>WENV181836140
OGVJ01001127
[OGVJ] freshwater metagenome; freshwater
2329
2403
+
Arg
TCT
[ENA]
¢þ
>WENV181845484
OGVX01002992
[OGVX] freshwater metagenome; freshwater
2214
2140
-
Arg
TCT
[ENA]
¢þ
>WENV181847563
OGVY01037827
[OGVY] freshwater metagenome; freshwater
268
342
+
Arg
TCT
[ENA]
¢þ
>WENV181850974
OGWE01004156
[OGWE] freshwater metagenome; freshwater
774
848
+
Arg
TCT
[ENA]
¢þ
>WENV181855640
OGWM01000197
[OGWM] freshwater metagenome; freshwater
4889
4963
+
Arg
TCT
[ENA]
¢þ
>WENV001943
AACY020054759
Marine microbial communities from Global Ocean Sampling (GOS)
704
782
+
Arg
TCT
[ENA]
>WENV002043
AACY020057527
Marine microbial communities from Global Ocean Sampling (GOS)
1617
1539
-
Arg
TCT
[ENA]
>WENV170570411
FLOH01000004
[FLOH] marine metagenome; water
430702
430778
+
Arg
TCT
[ENA]
¢þ
>WENV170602665
FUWD010251519
[FUWD] metagenome; unknown
142
68
-
Arg
TCT
[ENA]
¢þ
>WENV170619899
FUWD013022690
[FUWD] metagenome; unknown
9593
9667
+
Arg
TCT
[ENA]
¢þ
>WENV170626035
FUWD013212623
[FUWD] metagenome; unknown
395
469
+
Arg
TCT
[ENA]
¢þ
>WENV170628019
FUWD013240831
[FUWD] metagenome; unknown
9593
9667
+
Arg
TCT
[ENA]
¢þ
>WENV170645516
JNSK01000042
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
17613
17539
-
Arg
TCT
[ENA]
¢þ
>WENV002098
AACY020058600
Marine microbial communities from Global Ocean Sampling (GOS)
278
200
-
Arg
TCT
[ENA]
>C181020823
CP016768
Actinomycetota
Candidatus Nanopelagicus limnes [CP016768]
337434
337360
-
Arg
TCT
-
¡û
>C181021032
CP016774
Actinomycetota
Candidatus Planktophila versatilis [CP016774]
916325
916399
+
Arg
TCT
-
¡û
>C181021070
CP016775
Actinomycetota
Candidatus Planktophila versatilis [CP016775]
911362
911436
+
Arg
TCT
-
¡û
>C181021180
CP016778
Actinomycetota
Candidatus Planktophila versatilis [CP016778]
913492
913566
+
Arg
TCT
-
¡û
>C181021294
CP016781
Actinomycetota
Candidatus Planktophila versatilis [CP016781]
886487
886561
+
Arg
TCT
-
¡û
>WENV038586
AACY021945873
Marine microbial communities from Global Ocean Sampling (GOS)
94
16
-
Arg
TCT
[ENA]
>WENV057468
AACY023295537
Marine microbial communities from Global Ocean Sampling (GOS)
260
338
+
Arg
TCT
[ENA]
>WENV058055
AACY023315814
Marine microbial communities from Global Ocean Sampling (GOS)
1191
1115
-
Arg
TCT
[ENA]
>W121070018
AJWB01000067
Actinomycetota
actinobacterium SCGC AAA027-L06 [AJWB]
1227
1301
+
Arg
TCT
[ENA]
¡û
>WENV005968
AACY020165715
Marine microbial communities from Global Ocean Sampling (GOS)
798
876
+
Arg
TCT
[ENA]
>WENV006499
AACY020174843
Marine microbial communities from Global Ocean Sampling (GOS)
381
459
+
Arg
TCT
[ENA]
>WENV006924
AACY020181777
Marine microbial communities from Global Ocean Sampling (GOS)
748
670
-
Arg
TCT
[ENA]
>W1610625773
LIBC01000228
Actinomycetota
Actinobacteria bacterium BACL4 MAG-120813-bin39 [LIBC]
1109
1035
-
Arg
TCT
[ENA]
¡û
>W1610625792
LIBD01000063
Actinomycetota
Actinobacteria bacterium BACL4 MAG-120820-bin23 [LIBD]
1496
1422
-
Arg
TCT
[ENA]
¡û
>W1610625833
LIBF01000019
Actinomycetota
Actinobacteria bacterium BACL4 MAG-121001-bin59 [LIBF]
1105
1031
-
Arg
TCT
[ENA]
¡û
>W1610625853
LIBG01000012
Actinomycetota
Actinobacteria bacterium BACL4 MAG-121022-bin9 [LIBG]
1363
1289
-
Arg
TCT
[ENA]
¡û
>W1610626278
LIBZ01000055
Actinomycetota
Actinobacteria bacterium BACL4 MAG-120920-bin74 [LIBZ]
4409
4335
-
Arg
TCT
[ENA]
¡û
>W1610626707
LICQ01000072
Actinomycetota
Actinobacteria bacterium BACL4 MAG-120507-bin0 [LICQ]
1104
1030
-
Arg
TCT
[ENA]
¡û
>W1710756900
LIBC01000228
Actinomycetota
Actinobacteria bacterium BACL4 MAG-120813-bin39 [LIBC]
1109
1035
-
Arg
TCT
[ENA]
¡û
>W1710756919
LIBD01000063
Actinomycetota
Actinobacteria bacterium BACL4 MAG-120820-bin23 [LIBD]
1496
1422
-
Arg
TCT
[ENA]
¡û
>W1710756960
LIBF01000019
Actinomycetota
Actinobacteria bacterium BACL4 MAG-121001-bin59 [LIBF]
1105
1031
-
Arg
TCT
[ENA]
¡û
>W1710756980
LIBG01000012
Actinomycetota
Actinobacteria bacterium BACL4 MAG-121022-bin9 [LIBG]
1363
1289
-
Arg
TCT
[ENA]
¡û
>W1710757405
LIBZ01000055
Actinomycetota
Actinobacteria bacterium BACL4 MAG-120920-bin74 [LIBZ]
4409
4335
-
Arg
TCT
[ENA]
¡û
>W1710757834
LICQ01000072
Actinomycetota
Actinobacteria bacterium BACL4 MAG-120507-bin0 [LICQ]
1104
1030
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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