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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.163448 (34 seq.)
>W1711088358
LSYU01000068
Gammaproteobacteria
Marichromatium gracile [LSYU]
21533
21609
+
Arg
TCT
[ENA]
¡û
>W1711835307
MXUX01000002
Gammaproteobacteria
Salmonella enterica [MXUX]
132271
132347
+
Arg
TCT
[ENA]
¡û
>W1711843478
MXZT01000002
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Sandiego [MXZT]
72410
72486
+
Arg
TCT
[ENA]
¡û
>WENV180346241
OBLN01046498
[OBLN] sediment metagenome; sediment
655
731
+
Arg
TCT
[ENA]
¡û
>WENV180396812
OBPW01006185
[OBPW] marine metagenome; seawater
73
-1
-
Arg
TCT
[ENA]
¡û
>WENV181163169
OEIO01121245
[OEIO] marine metagenome; sea ice
290
366
+
Arg
TCT
[ENA]
¡û
>ENV08000995
ABMN01241717
marine metagenome; viral fraction from water below the boundary layer (eg, crevices and benthic surfaces) of Fanning (Tabuaeran; Northern Line Islands)
85
9
-
Arg
TCT
[ENA]
¡û
>WENV170197921
CEPK01179018
[CEPK] marine metagenome genome assembly TARA_042_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
699
623
-
Arg
TCT
[ENA]
¡û
>WENV170245794
CEQP01126471
[CEQP] marine metagenome genome assembly TARA_076_DCM_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
297
221
-
Arg
TCT
[ENA]
¡û
>WENV170252492
CEQU01010625
[CEQU] marine metagenome genome assembly TARA_076_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
172
96
-
Arg
TCT
[ENA]
¡û
>WENV170830253
MDSZ01023695
[MDSZ] marine metagenome; seawater
7766
7690
-
Arg
TCT
[ENA]
¡û
>WENV170857819
MDTB01013729
[MDTB] marine metagenome; seawater
1531
1607
+
Arg
TCT
[ENA]
¡û
>WENV170934992
MDTG01248751
[MDTG] marine metagenome; seawater
2412
2336
-
Arg
TCT
[ENA]
¡û
>C191197858
LR134156
Gammaproteobacteria
Salmonella enterica subsp. arizonae NCTC10047 [LR134156]
3606504
3606428
-
Arg
TCT
-
¡û
>W1911584700
PIPI01000008
Gammaproteobacteria
Aliidiomarina haloalkalitolerans AK5 [PIPI]
24556
24480
-
Arg
TCT
[ENA]
¡û
>SRA1001007
SRR001051.178453
Line Islands Corals viral fraction from water of Fanning (SRP000143)
85
9
-
Arg
TCT
[SRA]
>C151016280
CP007031
Gammaproteobacteria
Marichromatium purpuratum 984 [CP007031]
2154925
2154849
-
Arg
TCT
[Ensembl]
¡û
>W2010168609
CABFPG010000002
Gammaproteobacteria
Teredinibacter sp. ISS155 [CABFPG]
550000
549924
-
Arg
TCT
[ENA]
¡û
>W2010473176
JAAIJQ010000013
Gammaproteobacteria
Thiorhodococcus minor DSM 11518 [JAAIJQ]
78472
78396
-
Arg
TCT
[ENA]
¡û
>W2011194093
PIPI01000008
Gammaproteobacteria
Aliidiomarina haloalkalitolerans AK5 [PIPI]
24556
24480
-
Arg
TCT
[ENA]
¡û
>W2011417387
RHFI01000027
Gammaproteobacteria
Marichromatium sp. AB31 [RHFI]
5784
5860
+
Arg
TCT
[ENA]
¡û
>W2011417441
RHFJ01000079
Gammaproteobacteria
Marichromatium sp. AB32 [RHFJ]
6889
6813
-
Arg
TCT
[ENA]
¡û
>W2011631872
SMDC01000004
Gammaproteobacteria
Marichromatium gracile DSM 203 [SMDC]
96389
96313
-
Arg
TCT
[ENA]
¡û
>W2012204906
VWXX01000005
Gammaproteobacteria
Thiohalocapsa marina DSM 19078 [VWXX]
37776
37700
-
Arg
TCT
[ENA]
¡û
>C231650013
CP123007
Gammaproteobacteria
Salmonella enterica subsp. diarizonae serovar 48:i:z NWU_5 [CP123007]
880716
880792
+
Arg
TCT
-
¡û
>C241243471
CP121473
Gammaproteobacteria
Thiorhodovibrio litoralis 06511 [CP121473]
3369419
3369495
+
Arg
TCT
-
¡û
>W2130043340
NRRH01000067
Gammaproteobacteria
Marichromatium gracile DSM 203 [NRRH]
4016
3940
-
Arg
TCT
[ENA]
¡û
>W11176033
AFWS01000025
Gammaproteobacteria
Thiorhodovibrio frisius 970 [AFWS]
44804
44728
-
Arg
TCT
[ENA]
¡û
>W11176136
AFWU01000023
Gammaproteobacteria
Marichromatium purpuratum 984 [AFWU]
28373
28297
-
Arg
TCT
[ENA]
¡û
>WENV000481
AACY020014154
Marine microbial communities from Global Ocean Sampling (GOS)
177
99
-
Arg
TCT
[ENA]
>WENV055997
AACY023245907
Marine microbial communities from Global Ocean Sampling (GOS)
234
156
-
Arg
TCT
[ENA]
>C161107800
LN899469
Gammaproteobacteria
Idiomarinaceae bacterium HL-53 [LN899469]
2487148
2487072
-
Arg
TCT
-
¡û
>W1610922897
LSYU01000068
Gammaproteobacteria
Marichromatium gracile [LSYU]
21533
21609
+
Arg
TCT
[ENA]
¡û
>W1710760465
LIHO01000007
Gammaproteobacteria
Idiomarinaceae bacterium HL-53 [LIHO]
62494
62570
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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