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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.163526 (10 seq.)
>C193002540
CP036455
Actinomycetota
Streptomonospora litoralis M2 [CP036455]
4691412
4691338
-
Leu
TAA
-
¡û
>W2030049518
VFQC01000001
Actinomycetota
Haloactinospora alba DSM 45015 [VFQC]
3173125
3173049
-
Leu
TAA
[ENA]
¡û
>C233001650
CP063196
Actinomycetota
Thermobifida halotolerans DSM 44931 [CP063196]
5202133
5202209
+
Leu
TAA
-
¡û
>W2130002312
BMXL01000018
Actinomycetota
Nocardiopsis litoralis KCTC 19473 [BMXL]
27487
27563
+
Leu
TAA
[ENA]
¡û
>W2130019027
JADBGI010000013
Actinomycetota
Nocardiopsis coralli HNM0947 [JADBGI]
154890
154815
-
Leu
TAA
[ENA]
¡û
>W1630011512
LIZN01000001
Actinomycetota
Thermobifida halotolerans [LIZN]
80060
80136
+
Leu
TAA
[ENA]
¡û
>W1730013963
LIZN01000001
Actinomycetota
Thermobifida halotolerans [LIZN]
80060
80136
+
Leu
TAA
[ENA]
¡û
>W133001236
ANAY01000018
Actinomycetota
Nocardiopsis kunsanensis DSM 44524 [ANAY]
96518
96442
-
Leu
TAA
[ENA]
¡û
>W133001252
ANBE01000057
Actinomycetota
Nocardiopsis xinjiangensis YIM 90004 [ANBE]
33742
33666
-
Leu
TAA
[ENA]
¡û
>W133001255
ANBF01000157
Actinomycetota
Nocardiopsis salina YIM 90010 [ANBF]
25361
25437
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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