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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.163646 (20 seq.)
>WENV001200
AACY020036183
Marine microbial communities from Global Ocean Sampling (GOS)
1320
1242
-
Arg
CCT
[ENA]
>WENV180100102
OANK01024318
[OANK] marine metagenome; ENVO:00002010
196
120
-
Arg
CCT
[ENA]
¡û
>WENV180382549
OBOT01018612
[OBOT] marine metagenome; 0
130
54
-
Arg
CCT
[ENA]
¡û
>WENV180585561
OCOL01024318
[OCOL] marine metagenome; ENVO:00002010
196
120
-
Arg
CCT
[ENA]
¡û
>WENV180586062
OCOM01013506
[OCOM] marine metagenome; seawater
384
460
+
Arg
CCT
[ENA]
¡û
>WENV180586775
OCON01001826
[OCON] marine metagenome; seawater
2372
2296
-
Arg
CCT
[ENA]
¡û
>WENV180593550
OCOX01075580
[OCOX] marine metagenome; ENVO:00002010
431
355
-
Arg
CCT
[ENA]
¡û
>WENV180641654
OCRN01021783
[OCRN] marine metagenome; ENVO:00002010, 'SEA WATER
134
210
+
Arg
CCT
[ENA]
¡û
>WENV183699618
OZSS01037316
[OZSS] metagenome; Seawater sample
596
672
+
Arg
CCT
[ENA]
¡û
>WENV170116587
CENG01168822
[CENG] marine metagenome genome assembly TARA_007_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
325
401
+
Arg
CCT
[ENA]
¡û
>WENV170331351
CESW01050868
[CESW] marine metagenome genome assembly TARA_096_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
168
244
+
Arg
CCT
[ENA]
¡û
>WENV170332543
CESW01209587
[CESW] marine metagenome genome assembly TARA_096_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
590
666
+
Arg
CCT
[ENA]
¡û
>WENV170401718
CEUE01267187
[CEUE] marine metagenome genome assembly TARA_133_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
330
406
+
Arg
CCT
[ENA]
¡û
>WENV170585706
FUFK010318423
[FUFK] metagenome; unknown
826
901
+
Arg
CCT
[ENA]
¡û
>WENV170769754
LXNH01068390
[LXNH] seawater metagenome; marine seawater
210
286
+
Arg
CCT
[ENA]
¡û
>WENV170769966
LXNH01078549
[LXNH] seawater metagenome; marine seawater
160
236
+
Arg
CCT
[ENA]
¡û
>WENV170867295
MDTB01144746
[MDTB] marine metagenome; seawater
23
99
+
Arg
CCT
[ENA]
¡û
>WENV170886174
MDTC01216056
[MDTC] marine metagenome; seawater
1314
1238
-
Arg
CCT
[ENA]
¡û
>WENV170940997
MDTG01353028
[MDTG] marine metagenome; seawater
2037
2113
+
Arg
CCT
[ENA]
¡û
>WENV005734
AACY020160651
Marine microbial communities from Global Ocean Sampling (GOS)
256
334
+
Arg
CCT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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