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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.163655 (28 seq.)
>A171000248
CP000866
Nitrososphaerota
Nitrosopumilus maritimus SCM1 [CP000866]
754037
753963
-
Phe
GAA
-
¡û
>A171003404
CP003842
Nitrososphaerota
Candidatus Nitrosopumilus koreensis AR1 [CP003842]
783474
783400
-
Phe
GAA
-
¡û
>A171003427
CP003843
Nitrososphaerota
Candidatus Nitrosopumilus sediminis AR2 [CP003843]
765516
765442
-
Phe
GAA
-
¡û
>A171005916
CP010868
Nitrososphaerota
Nitrosopumilus piranensis D3C [CP010868]
1091905
1091980
+
Phe
GAA
-
¡û
>A171006017
CP011070
Nitrososphaerota
Nitrosopumilus adriaticus NF5 [CP011070]
983607
983682
+
Phe
GAA
-
¡û
>WENV180309820
OBJS01049275
[OBJS] beach sand metagenome; beach sand
197
123
-
Phe
GAA
[ENA]
¢þ
>At0056
DP000238
Nitrososphaerota
Cenarchaeum symbiosum [DP000238]
208125
208201
+
Phe
GAA
[Ensembl]
¡û
>WENV170538244
CEWR01065240
[CEWR] marine metagenome genome assembly TARA_085_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
145
219
+
Phe
GAA
[ENA]
¢þ
>WENV170538753
CEWR01114239
[CEWR] marine metagenome genome assembly TARA_085_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1079
1005
-
Phe
GAA
[ENA]
¢þ
>WENV170701273
LKGT01006120
[LKGT] marine sediment metagenome; sediment sample collected at the water-sediment interface from the South Pacific gyre, IODP
1018
1092
+
Phe
GAA
[ENA]
¢þ
>WENV170701417
LKGT01008623
[LKGT] marine sediment metagenome; sediment sample collected at the water-sediment interface from the South Pacific gyre, IODP
1227
1153
-
Phe
GAA
[ENA]
¢þ
>W1910126239
BGKI01000007
Nitrososphaerota
Nitrosopumilus zosterae sp. NM25 [BGKI]
25933
25857
-
Phe
GAA
[ENA]
¡û
>W1910572997
JOKN01000061
Nitrososphaerota
Marine Group I thaumarchaeote SCGC AAA799-N04 [JOKN]
508
582
+
Phe
GAA
[ENA]
¡û
>W1910573215
JOSY01000029
Nitrososphaerota
Marine Group I thaumarchaeote SCGC AAA799-D11 [JOSY]
2520
2446
-
Phe
GAA
[ENA]
¡û
>W1910573229
JOSZ01000003
Nitrososphaerota
Marine Group I thaumarchaeote SCGC AAA799-P11 [JOSZ]
49078
49004
-
Phe
GAA
[ENA]
¡û
>W1910573259
JOTA01000031
Nitrososphaerota
Marine Group I thaumarchaeote SCGC AAA799-B03 [JOTA]
2547
2473
-
Phe
GAA
[ENA]
¡û
>W1910573307
JOTD01000049
Nitrososphaerota
Marine Group I thaumarchaeote SCGC RSA3 [JOTD]
2351
2277
-
Phe
GAA
[ENA]
¡û
>W1610000549
ABEO01000001
Nitrososphaerota
Nitrosopumilus maritimus maritimus SCM1 [ABEO]
14650
14576
-
Phe
GAA
[ENA]
¡û
>W1610005394
AJVI01000002
Nitrososphaerota
Nitrosopumilus sp. SJ [AJVI]
96120
96046
-
Phe
GAA
[ENA]
¡û
>W1610005440
AJVJ01000025
Nitrososphaerota
Nitrosopumilus sp. AR [AJVJ]
96114
96040
-
Phe
GAA
[ENA]
¡û
>W1610005468
AJVJ01000055
Nitrososphaerota
Nitrosopumilus sp. AR [AJVJ]
43324
43398
+
Phe
GAA
[ENA]
¡û
>W1610029899
AXWL01000008
Nitrososphaerota
Thaumarchaeota archaeon SCGC AAA282-K18 [AXWL]
11677
11751
+
Phe
GAA
[ENA]
¡û
>W1610029900
AXWL01000008
Nitrososphaerota
Thaumarchaeota archaeon SCGC AAA282-K18 [AXWL]
29871
29797
-
Phe
GAA
[ENA]
¡û
>W1610597532
LFEY01000028
Nitrososphaerota
Thaumarchaeota archaeon casp-thauma3 [LFEY]
20613
20539
-
Phe
GAA
[ENA]
¡û
>W1610617261
LGTD01000779
Nitrososphaerota
Candidatus Nitrosopumilus sp. DDS1 [LGTD]
658
582
-
Phe
GAA
[ENA]
¡û
>ENV004151
DQ397558
Environmental sample from ENV division of INSDC
1752
1674
-
Phe
GAA
[ENA]
>ENV004196
DQ397629
Environmental sample from ENV division of INSDC
34267
34189
-
Phe
GAA
[ENA]
>ENV004238
DQ397863
Environmental sample from ENV division of INSDC
7587
7509
-
Phe
GAA
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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