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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.163672 (23 seq.)
>A171000857
CP001696
Euryarchaeota
Methanocaldococcus fervens AG86 [CP001696]
810983
811059
+
Thr
TGT
-
¡û
>A171001016
CP001787
Euryarchaeota
Methanocaldococcus vulcanius M7 [CP001787]
1740966
1740890
-
Thr
TGT
-
¡û
>A171001258
CP001901
Euryarchaeota
Methanocaldococcus sp. FS406-22 [CP001901]
1157209
1157285
+
Thr
TGT
-
¡û
>A171001482
CP002009
Euryarchaeota
Methanocaldococcus infernus ME [CP002009]
1252365
1252441
+
Thr
TGT
-
¡û
>A171002207
CP002737
Euryarchaeota
Methanotorris igneus Kol 5 [CP002737]
1003653
1003729
+
Thr
TGT
-
¡û
>A171004489
CP009149
Euryarchaeota
Methanocaldococcus bathoardescens JH146 [CP009149]
1276894
1276818
-
Thr
TGT
-
¡û
>WENV180287757
OBIL01002431
[OBIL] metagenome; hydrothermal vent
285
209
-
Thr
TGT
[ENA]
¢þ
>WENV181212986
OFBU01003541
[OFBU] metagenome; hydrothermal vent
872
796
-
Thr
TGT
[ENA]
¢þ
>WENV181213465
OFBV01003765
[OFBV] metagenome; hydrothermal vent
1130
1206
+
Thr
TGT
[ENA]
¢þ
>WENV181214079
OFBW01010328
[OFBW] metagenome; hydrothermal vent
429
505
+
Thr
TGT
[ENA]
¢þ
>WENV181214375
OFBX01006299
[OFBX] metagenome; hydrothermal vent
374
298
-
Thr
TGT
[ENA]
¢þ
>WENV181214575
OFBY01002278
[OFBY] metagenome; hydrothermal vent
1419
1495
+
Thr
TGT
[ENA]
¢þ
>WENV181215064
OFBZ01002361
[OFBZ] metagenome; hydrothermal vent
525
601
+
Thr
TGT
[ENA]
¢þ
>WENV181215663
OFCA01006980
[OFCA] metagenome; hydrothermal vent
569
493
-
Thr
TGT
[ENA]
¢þ
>WENV181216147
OFCB01006168
[OFCB] metagenome; hydrothermal vent
857
933
+
Thr
TGT
[ENA]
¢þ
>W1910067440
BFAX01000003
Euryarchaeota
Methanofervidicoccus abyssi HHB [BFAX]
37305
37232
-
Thr
TGT
[ENA]
¡û
>W1610001104
ACQW01000003
Euryarchaeota
Methanocaldococcus fervens AG86 [ACQW]
82748
82824
+
Thr
TGT
[ENA]
¡û
>W1610001143
ACQY01000005
Euryarchaeota
Methanocaldococcus infernus ME [ACQY]
67788
67864
+
Thr
TGT
[ENA]
¡û
>W1610001535
ACUW01000001
Euryarchaeota
Methanocaldococcus vulcanius M7 [ACUW]
478531
478607
+
Thr
TGT
[ENA]
¡û
>W1610001636
ADCA01000004
Euryarchaeota
Methanocaldococcus sp. FS406-22 [ADCA] FS406-22 [ADCA]
39018
38942
-
Thr
TGT
[ENA]
¡û
>W1610004274
AGJL01000001
Euryarchaeota
Methanotorris formicicus Mc-S-70 [AGJL]
56363
56287
-
Thr
TGT
[ENA]
¡û
>W1610018087
APMM01000001
Euryarchaeota
Methanocaldococcus villosus KIN24-T80 [APMM]
45334
45258
-
Thr
TGT
[ENA]
¡û
>W1610018637
AQUK01000001
Euryarchaeota
Methanocaldococcus villosus KIN24-T80 [AQUK]
965264
965340
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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