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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.16374 (28 seq.)
>W1711129639
LUUF01000003
Gammaproteobacteria
Methylomonas methanica [LUUF]
10839
10749
-
Ser
GCT
[ENA]
¡û
>W1711129703
LUUG01000087
Gammaproteobacteria
Methylomonas methanica [LUUG]
15212
15302
+
Ser
GCT
[ENA]
¡û
>W1711129733
LUUH01000046
Gammaproteobacteria
Methylomonas methanica [LUUH]
17824
17914
+
Ser
GCT
[ENA]
¡û
>W1711129797
LUUI01000163
Gammaproteobacteria
Methylomonas lenta [LUUI]
13903
13813
-
Ser
GCT
[ENA]
¡û
>W1711129844
LUUJ01000134
Gammaproteobacteria
Methylomonas koyamae [LUUJ]
134506
134596
+
Ser
GCT
[ENA]
¡û
>W1711129907
LUUL01000068
Gammaproteobacteria
Methylomonas koyamae [LUUL]
14848
14758
-
Ser
GCT
[ENA]
¡û
>W131155757
AQOV01000001
Gammaproteobacteria
Methylomonas sp. MK1 [AQOV]
1947522
1947432
-
Ser
GCT
[ENA]
¡û
>WENV180273356
OBEQ012476283
[OBEQ] groundwater metagenome; groundwater
369
279
-
Ser
GCT
[ENA]
¢þ
>W141219946
AZXK01000002
Gammaproteobacteria
Methylomonas sp. 11b [AZXK]
842602
842512
-
Ser
GCT
[ENA]
¡û
>WENV170577446
FSSH01000017
[FSSH] freshwater metagenome; drinking water
180026
180116
+
Ser
GCT
[ENA]
¢þ
>WENV170640967
JFJP01031717
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
18299
18389
+
Ser
GCT
[ENA]
¢þ
>C181088683
CP023669
Gammaproteobacteria
Methylomonas koyamae LM6 [CP023669]
3661196
3661106
-
Ser
GCT
-
¡û
>C191105416
CP033381
Gammaproteobacteria
Methylomonas sp. LW13 [CP033381]
1398363
1398453
+
Ser
GCT
-
¡û
>W141733708
JNLB01000010
Gammaproteobacteria
Methylomonas sp. LW13 [JNLB]
163627
163537
-
Ser
GCT
[ENA]
¡û
>W1810154935
PIZT01000016
Gammaproteobacteria
Methylomonas sp. Kb3 [PIZT]
44690
44780
+
Ser
GCT
[ENA]
¡û
>W1810296027
PTIY01000027
Gammaproteobacteria
Methylobacter tundripaludum OWC-G53F [PTIY]
15843
15753
-
Ser
GCT
[ENA]
¡û
>C11114749
CP002738
Gammaproteobacteria
Methylomonas methanica MC09 [CP002738]
4110319
4110229
-
Ser
GCT
[Ensembl]
¡û
>W1511397852
JTDD01000002
Gammaproteobacteria
Methylomonas denitrificans FJG1 [JTDD]
53881
53971
+
Ser
GCT
[ENA]
¡û
>C161072133
CP014360
Gammaproteobacteria
Methylomonas sp. DH-1 [CP014360]
3532690
3532600
-
Ser
GCT
[Ensembl]
¡û
>C161072468
CP014476
Gammaproteobacteria
Methylomonas denitrificans FJG1 [CP014476]
742645
742555
-
Ser
GCT
[Ensembl]
¡û
>W1610046462
BBCK01000001
Gammaproteobacteria
Methylomonas koyamae JCM 16701 [BBCK]
22955
23045
+
Ser
GCT
[ENA]
¡û
>W1610940712
LUUF01000003
Gammaproteobacteria
Methylomonas methanica [LUUF]
10839
10749
-
Ser
GCT
[ENA]
¡û
>W1610940776
LUUG01000087
Gammaproteobacteria
Methylomonas methanica [LUUG]
15212
15302
+
Ser
GCT
[ENA]
¡û
>W1610940806
LUUH01000046
Gammaproteobacteria
Methylomonas methanica [LUUH]
17824
17914
+
Ser
GCT
[ENA]
¡û
>W1610940870
LUUI01000163
Gammaproteobacteria
Methylomonas lenta [LUUI]
13903
13813
-
Ser
GCT
[ENA]
¡û
>W1610940917
LUUJ01000134
Gammaproteobacteria
Methylomonas koyamae [LUUJ]
134506
134596
+
Ser
GCT
[ENA]
¡û
>W1610940980
LUUL01000068
Gammaproteobacteria
Methylomonas koyamae [LUUL]
14848
14758
-
Ser
GCT
[ENA]
¡û
>W1710043258
BBCK01000001
Gammaproteobacteria
Methylomonas koyamae JCM 16701 [BBCK]
22955
23045
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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