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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.163799 (8 seq.)
>WENV170182404
CEOX01183812
[CEOX] marine metagenome genome assembly TARA_065_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
327
251
-
Cys
GCA
[ENA]
¡û
>WENV170185228
CEOZ01199993
[CEOZ] marine metagenome genome assembly TARA_064_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
615
539
-
Cys
GCA
[ENA]
¡û
>WENV170190287
CEPC01088052
[CEPC] marine metagenome genome assembly TARA_064_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
163
239
+
Cys
GCA
[ENA]
¡û
>WENV170346590
CETG01051636
[CETG] marine metagenome genome assembly TARA_122_DCM_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2119
2043
-
Cys
GCA
[ENA]
¡û
>WENV170804328
MDSW01045570
[MDSW] marine metagenome; seawater
11298
11222
-
Cys
GCA
[ENA]
¡û
>WENV170849858
MDTA01103557
[MDTA] marine metagenome; seawater
1008
1084
+
Cys
GCA
[ENA]
¡û
>WENV170901433
MDTD01170491
[MDTD] marine metagenome; seawater
8415
8491
+
Cys
GCA
[ENA]
¡û
>WENV003625
AACY020099576
Marine microbial communities from Global Ocean Sampling (GOS)
2451
2375
-
Cys
GCA
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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