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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.163876 (24 seq.)
>W1711022889
LRAC01000126
Bacillota
Paenibacillus sp. DMB5 [LRAC]
93696
93771
+
Pro
GGG
[ENA]
¡û
>W1711677993
MRTW01000008
Bacillota
Paenibacillus sp. FSL R7-0333 [MRTW]
54038
54113
+
Pro
GGG
[ENA]
¡û
>C171098088
CP019687
Bacillota
Paenibacillus larvae subsp. larvae ATCC 9545 [CP019687]
4113698
4113774
+
Pro
GGG
-
¡û
>C171099982
CP019794
Bacillota
Paenibacillus larvae subsp. pulvifaciens ATCC 13537 [CP019794]
3865628
3865704
+
Pro
GGG
-
¡û
>C171104941
CP020327
Bacillota
Paenibacillus larvae subsp. pulvifaciens CCM 38 [CP020327]
3066728
3066804
+
Pro
GGG
-
¡û
>C171109120
CP020557
Bacillota
Paenibacillus larvae subsp. pulvifaciens SAG 10367 [CP020557]
3733907
3733983
+
Pro
GGG
-
¡û
>W131235825
AULW01000022
Bacillota
Paenibacillus pasadenensis DSM 19293 [AULW]
154036
153960
-
Pro
GGG
[ENA]
¡û
>W141000994
ADFW01000002
Bacillota
Paenibacillus larvae subsp. larvae DSM 25719 [ADFW]
94451
94527
+
Pro
GGG
[ENA]
¡û
>WENV170705624
LNAP01000030
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
75350
75275
-
Pro
GGG
[ENA]
¢þ
>WENV170708041
LNAP01045946
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1456
1529
+
Pro
GGG
[ENA]
¢þ
>WENV170708067
LNAP01047633
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
78
3
-
Pro
GGG
[ENA]
¢þ
>C181038491
CP019651
Bacillota
Paenibacillus larvae subsp. larvae ERIC_I [CP019651]
3400431
3400355
-
Pro
GGG
-
¡û
>C181038530
CP019652
Bacillota
Paenibacillus larvae subsp. larvae DSM 25430 DSM 25430; ERIC_II [CP019652]
1254426
1254502
+
Pro
GGG
-
¡û
>C181038614
CP019655
Bacillota
Paenibacillus larvae subsp. larvae Eric_III [CP019655]
1442817
1442893
+
Pro
GGG
-
¡û
>C181038691
CP019659
Bacillota
Paenibacillus larvae subsp. larvae Eric_IV [CP019659]
1459350
1459426
+
Pro
GGG
-
¡û
>W1910155309
BIMM01000007
Bacillota
Paenibacillus pasadenensis NBRC 101214 [BIMM]
21624
21548
-
Pro
GGG
[ENA]
¡û
>C141001415
CP003355
Bacillota
Paenibacillus larvae subsp. larvae DSM 25430 [CP003355]
1287422
1287498
+
Pro
GGG
[Ensembl]
¡û
>W1910891873
NFEZ01000004
Bacillota
Paenibacillus pasadenensis R16 [NFEZ]
2419996
2420072
+
Pro
GGG
[ENA]
¡û
>C151047850
CP009283
Bacillota
Paenibacillus sp. FSL R7-0273 [CP009283]
4454928
4454855
-
Pro
GGG
[Ensembl]
¡û
>W11130178
ADZY01000051
Bacillota
Paenibacillus larvae subsp. larvae B-3650 [ADZY]
76101
76177
+
Pro
GGG
[ENA]
¡û
>W1511584981
LAWY01000001
Bacillota
Paenibacillus larvae MEX14 [LAWY]
137714
137638
-
Pro
GGG
[ENA]
¡û
>W1511586925
LAZU01000018
Bacillota
Paenibacillus sp. DMB20 [LAZU]
157531
157607
+
Pro
GGG
[ENA]
¡û
>W1610871134
LRAC01000126
Bacillota
Paenibacillus sp. DMB5 [LRAC]
93696
93771
+
Pro
GGG
[ENA]
¡û
>W1710518267
FNDX01000025
Bacillota
Paenibacillus typhae [FNDX]
4828
4755
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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