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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
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Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.163948 (6 seq.)
>WENV181848984
OGVZ01039047
[OGVZ] freshwater metagenome; freshwater
111
35
-
Asp
GTC
[ENA]
¡û
>WENV021773
AACY020597187
Marine microbial communities from Global Ocean Sampling (GOS)
70
146
+
Asp
GTC
[ENA]
>WENV025728
AACY020909476
Marine microbial communities from Global Ocean Sampling (GOS)
531
455
-
Asp
GTC
[ENA]
>WENV061530
AACY023434273
Marine microbial communities from Global Ocean Sampling (GOS)
1298
1222
-
Asp
GTC
[ENA]
>WENV006180
AACY020169764
Marine microbial communities from Global Ocean Sampling (GOS)
156
232
+
Asp
GTC
[ENA]
>WENV006511
AACY020175175
Marine microbial communities from Global Ocean Sampling (GOS)
345
269
-
Asp
GTC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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