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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.163953 (22 seq.)
>W131228739
AUGE01000028
Thermodesulfobacteriota
Citrifermentans bremense R1 [AUGE]
49819
49743
-
Ile
GAT
[ENA]
¡û
>w024805
AAZA01000028
Thermodesulfobacteriota
Citrifermentans bemidjiense Bem [AAZA]
49381
49303
-
Ile
GAT
[ENA]
¡û
>w024783
AAZA01000008
Thermodesulfobacteriota
Citrifermentans bemidjiense Bem [AAZA]
90530
90452
-
Ile
GAT
[ENA]
¡û
>WENV180252285
OBEQ010437635
[OBEQ] groundwater metagenome; groundwater
193
117
-
Ile
GAT
[ENA]
¢þ
>W08010625
ABRF01000002
Thermodesulfobacteriota
Geobacter sp. M21 [ABRF]
212686
212762
+
Ile
GAT
[ENA]
¡û
>WENV182928940
OKUO01034473
[OKUO] human gut metagenome; feces
272
348
+
Ile
GAT
[ENA]
¢þ
>C08005179
CP001124
Thermodesulfobacteriota
Citrifermentans bemidjiense Bem [CP001124]
952274
952350
+
Ile
GAT
[Ensembl]
¡û
>C08005186
CP001124
Thermodesulfobacteriota
Citrifermentans bemidjiense Bem [CP001124]
1125605
1125681
+
Ile
GAT
[Ensembl]
¡û
>C08005188
CP001124
Thermodesulfobacteriota
Citrifermentans bemidjiense Bem [CP001124]
1177220
1177296
+
Ile
GAT
[Ensembl]
¡û
>C08005208
CP001124
Thermodesulfobacteriota
Citrifermentans bemidjiense Bem [CP001124]
3905919
3905846
-
Ile
GAT
[Ensembl]
¡û
>WENV170006077
AMQJ01023700
[AMQJ] sediment metagenome; subsurface aquifer sediment
181
105
-
Ile
GAT
[ENA]
¢þ
>WENV170660660
JXWU01009955
[JXWU] soil metagenome; rice field; organic control Plot
353
429
+
Ile
GAT
[ENA]
¢þ
>W09133651
ACPJ01000138
Thermodesulfobacteriota
Geobacter sp. M18 [ACPJ]
2018
2094
+
Ile
GAT
[ENA]
¡û
>C09106392
CP001661
Thermodesulfobacteriota
Geobacter sp. M21 [CP001661]
1013026
1013102
+
Ile
GAT
[Ensembl]
¡û
>C09106408
CP001661
Thermodesulfobacteriota
Geobacter sp. M21 [CP001661]
3997488
3997412
-
Ile
GAT
[Ensembl]
¡û
>C09106415
CP001661
Thermodesulfobacteriota
Geobacter sp. M21 [CP001661]
3823940
3823864
-
Ile
GAT
[Ensembl]
¡û
>C09106417
CP001661
Thermodesulfobacteriota
Geobacter sp. M21 [CP001661]
3772153
3772077
-
Ile
GAT
[Ensembl]
¡û
>C11109554
CP002479
Thermodesulfobacteriota
Geobacter sp. M18 [CP002479]
861185
861261
+
Ile
GAT
[Ensembl]
¡û
>C11109561
CP002479
Thermodesulfobacteriota
Geobacter sp. M18 [CP002479]
1038786
1038862
+
Ile
GAT
[Ensembl]
¡û
>C11109581
CP002479
Thermodesulfobacteriota
Geobacter sp. M18 [CP002479]
4124916
4124840
-
Ile
GAT
[Ensembl]
¡û
>C11109583
CP002479
Thermodesulfobacteriota
Geobacter sp. M18 [CP002479]
4072274
4072198
-
Ile
GAT
[Ensembl]
¡û
>W1710087169
BDQG01000001
Thermodesulfobacteriota
Geoanaerobacter pelophilus [BDQG]
4173757
4173833
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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