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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.163967 (29 seq.)
>A171000242
CP000866
Nitrososphaerota
Nitrosopumilus maritimus SCM1 [CP000866]
1366079
1366152
+
Thr
GGT
-
¡û
>A171006059
CP011097
Nitrososphaerota
Candidatus Nitrosotenuis cloacae SAT1 [CP011097]
388592
388519
-
Thr
GGT
-
¡û
>WENV180039793
LLBY010166292
[LLBY] soil metagenome; soil from tomato rhizosphere
201
274
+
Thr
GGT
[ENA]
¡û
>WENV180258495
OBEQ011013140
[OBEQ] groundwater metagenome; groundwater
1055
981
-
Thr
GGT
[ENA]
¡û
>WENV180310187
OBJS01297693
[OBJS] beach sand metagenome; beach sand
145
72
-
Thr
GGT
[ENA]
¡û
>WENV180372711
OBOI01115745
[OBOI] sediment metagenome; sediment
383
310
-
Thr
GGT
[ENA]
¡û
>WENV183661990
ORJL010155352
[ORJL] groundwater metagenome; groundwater
3601
3674
+
Thr
GGT
[ENA]
¡û
>WENV183667592
ORJL010662997
[ORJL] groundwater metagenome; groundwater
299
226
-
Thr
GGT
[ENA]
¡û
>WENV183680783
ORMF010222455
[ORMF] groundwater metagenome; groundwater
2027
1954
-
Thr
GGT
[ENA]
¡û
>WENV183695828
ORMF012454974
[ORMF] groundwater metagenome; groundwater
1619
1692
+
Thr
GGT
[ENA]
¡û
>WENV183695829
ORMF012455020
[ORMF] groundwater metagenome; groundwater
91
18
-
Thr
GGT
[ENA]
¡û
>At0060
DP000238
Nitrososphaerota
Cenarchaeum symbiosum [DP000238]
348380
348453
+
Thr
GGT
[Ensembl]
¡û
>WENV170356705
CETJ01059671
[CETJ] marine metagenome genome assembly TARA_122_MES_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2342
2418
+
Thr
GGT
[ENA]
¡û
>WENV170557424
CXWL01026714
[CXWL] groundwater metagenome; biofilm material
2360
2433
+
Thr
GGT
[ENA]
¡û
>WENV170566189
FKKE01008809
[FKKE] freshwater metagenome; freshwater
481
408
-
Thr
GGT
[ENA]
¡û
>WENV170740238
LULR01003332
[LULR] marine metagenome; Red Sea water column Station 108 - depth 500m
1514
1441
-
Thr
GGT
[ENA]
¡û
>WENV170740618
LULR01020919
[LULR] marine metagenome; Red Sea water column Station 108 - depth 500m
103
30
-
Thr
GGT
[ENA]
¡û
>WENV170744938
LULX01021907
[LULX] marine metagenome; Red Sea water column Station 91 - depth 500m
628
555
-
Thr
GGT
[ENA]
¡û
>WENV170748711
LUME01001034
[LUME] marine metagenome; Red Sea water column Station 34 - depth 200m
755
682
-
Thr
GGT
[ENA]
¡û
>A211000708
CP067007
Nitrososphaerota
Nitrosopumilus sp. K4 [CP067007]
149914
149840
-
Thr
GGT
-
¡û
>A241001327
CP030847
Nitrososphaerota
Nitrosarchaeum sp. AC2 [CP030847]
1470501
1470574
+
Thr
GGT
-
¡û
>WENV006299
AACY020171335
Marine microbial communities from Global Ocean Sampling (GOS)
1587
1511
-
Thr
GGT
[ENA]
>W1610000530
ABEO01000001
Nitrososphaerota
Nitrosopumilus maritimus maritimus SCM1 [ABEO]
626695
626768
+
Thr
GGT
[ENA]
¡û
>W1610002173
AEGP01000066
Nitrososphaerota
Candidatus Nitrosarchaeum limnium limnia SFB1 [AEGP]
23390
23463
+
Thr
GGT
[ENA]
¡û
>W1610003300
AFPU01000001
Nitrososphaerota
Nitrosarchaeum koreense koreensis MY1 [AFPU]
1291360
1291433
+
Thr
GGT
[ENA]
¡û
>W1610004537
AHJG01000287
Nitrososphaerota
Candidatus Nitrosarchaeum limnium limnia BG20 [AHJG]
27243
27170
-
Thr
GGT
[ENA]
¡û
>W1610083091
CBTY010000009
Nitrososphaerota
Candidatus Nitrosotenuis uzonensis N4 [CBTY]
275886
275959
+
Thr
GGT
[ENA]
¡û
>W1610594026
LDXL01000004
Nitrososphaerota
Thaumarchaeota archaeon CSP1-1 [LDXL]
75151
75224
+
Thr
GGT
[ENA]
¡û
>ENV004159
DQ397569
Environmental sample from ENV division of INSDC
12943
12867
-
Thr
GGT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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