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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.164100 (11 seq.)
>W1710806094
LKAQ01000001
Thermodesulfobacteriota
Pseudodesulfovibrio hydrargyri dechloracetivorans [LKAQ]
225905
225981
+
Val
CAC
[ENA]
¡û
>WENV183710109
PDWI01039628
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1994
2070
+
Val
CAC
[ENA]
¢þ
>C191000233
AP017378
Thermodesulfobacteriota
Desulfovibrio ferrophilus IS5 [AP017378]
479502
479578
+
Val
CAC
-
¡û
>W1911738011
QTZO01000004
Thermodesulfobacteriota
Pseudodesulfovibrio sp. S3 [QTZO]
227425
227349
-
Val
CAC
[ENA]
¡û
>W10111369
ADDI01000005
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
4765
4689
-
Val
CAC
[ENA]
¡û
>C11106881
CP002431
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [CP002431]
1505172
1505096
-
Val
CAC
[Ensembl]
¡û
>W11114312
ADDI01000005
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
4765
4689
-
Val
CAC
[ENA]
¡û
>W11149107
AEUJ01000002
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [AEUJ]
87178
87254
+
Val
CAC
[ENA]
¡û
>C121008970
CP003220
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [CP003220]
744853
744929
+
Val
CAC
[Ensembl]
¡û
>C161068277
CP014206
Thermodesulfobacteriota
Pseudodesulfovibrio indicus J2 [CP014206]
2448045
2447969
-
Val
CAC
[Ensembl]
¡û
>C131017958
FO203427
Thermodesulfobacteriota
Pseudodesulfovibrio piezophilus C1TLV30 type strain: C1TLV30 [FO203427]
154414
154338
-
Val
CAC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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