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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.16446 (86 seq.)
>WENV180125106
OASY01000782
[OASY] human gut metagenome; faeces
271
183
-
Ser
GGA
[ENA]
¡û
>WENV180126167
OASZ01000800
[OASZ] human gut metagenome; faeces
17913
18001
+
Ser
GGA
[ENA]
¡û
>WENV180164641
OAVJ01004802
[OAVJ] human gut metagenome; faeces
3317
3406
+
Ser
GGA
[ENA]
¡û
>WENV180293395
OBIX01057732
[OBIX] human gut metagenome; human gut
49
138
+
Ser
GGA
[ENA]
¡û
>WENV180313803
OBKF01022539
[OBKF] human gut metagenome; human gut
197
109
-
Ser
GGA
[ENA]
¡û
>WENV180424416
OBVX01001025
[OBVX] human gut metagenome; faeces
10794
10882
+
Ser
GGA
[ENA]
¡û
>WENV180486127
OBZK01027874
[OBZK] human gut metagenome; faeces
168
80
-
Ser
GGA
[ENA]
¡û
>WENV180534743
OCHM01050014
[OCHM] human gut metagenome; human gut
460
549
+
Ser
GGA
[ENA]
¡û
>WENV180568118
OCLM01045353
[OCLM] human gut metagenome; human gut
176
265
+
Ser
GGA
[ENA]
¡û
>WENV180599531
OCPP01001634
[OCPP] human gut metagenome; faeces
328
240
-
Ser
GGA
[ENA]
¡û
>WENV180672303
OCVV011324630
[OCVV] gut metagenome; gut
171
82
-
Ser
GGA
[ENA]
¡û
>WENV180672304
OCVV011324630
[OCVV] gut metagenome; gut
171
82
-
Ser
GGA
[ENA]
¡û
>WENV180675577
OCVV011358771
[OCVV] gut metagenome; gut
4194
4283
+
Ser
GGA
[ENA]
¡û
>WENV180675579
OCVV011358771
[OCVV] gut metagenome; gut
4194
4283
+
Ser
GGA
[ENA]
¡û
>WENV180719701
ODGJ01004533
[ODGJ] human metagenome; G_DNA_Tongue dorsum
5391
5480
+
Ser
GGA
[ENA]
¡û
>WENV180720273
ODGJ01028234
[ODGJ] human metagenome; G_DNA_Tongue dorsum
673
582
-
Ser
GGA
[ENA]
¡û
>WENV180779642
ODIN01010306
[ODIN] human metagenome; G_DNA_Throat
163
74
-
Ser
GGA
[ENA]
¡û
>WENV180782591
ODIQ01000060
[ODIQ] human metagenome; G_DNA_Tongue dorsum
103543
103632
+
Ser
GGA
[ENA]
¡û
>WENV180795158
ODIZ01039657
[ODIZ] human metagenome; G_DNA_Tongue dorsum
162
71
-
Ser
GGA
[ENA]
¡û
>WENV180807132
ODJI01000598
[ODJI] human metagenome; G_DNA_Tongue dorsum
651
563
-
Ser
GGA
[ENA]
¡û
>WENV180809834
ODJK01055489
[ODJK] human metagenome; G_DNA_Subgingival plaque
573
664
+
Ser
GGA
[ENA]
¡û
>WENV180855284
ODKX01059816
[ODKX] human metagenome; G_DNA_Tongue dorsum
160
69
-
Ser
GGA
[ENA]
¡û
>WENV180856720
ODKZ01055952
[ODKZ] human metagenome; G_DNA_Tongue dorsum
162
73
-
Ser
GGA
[ENA]
¡û
>WENV180860844
ODLE01000160
[ODLE] human metagenome; G_DNA_Tongue dorsum
50464
50553
+
Ser
GGA
[ENA]
¡û
>WENV180878363
ODLV01046059
[ODLV] human metagenome; G_DNA_Tongue dorsum
163
74
-
Ser
GGA
[ENA]
¡û
>WENV180929711
ODTN01010114
[ODTN] human metagenome; G_DNA_Tongue dorsum
159
68
-
Ser
GGA
[ENA]
¡û
>WENV180949615
ODUG01025104
[ODUG] human metagenome; G_DNA_Tongue dorsum
162
73
-
Ser
GGA
[ENA]
¡û
>WENV180998689
ODVT01001243
[ODVT] human metagenome; G_DNA_Buccal mucosa
163
72
-
Ser
GGA
[ENA]
¡û
>WENV181004907
ODVY01000637
[ODVY] human metagenome; G_DNA_Stool
38349
38437
+
Ser
GGA
[ENA]
¡û
>WENV181043988
ODXV01001984
[ODXV] human metagenome; G_DNA_Tongue dorsum
10508
10597
+
Ser
GGA
[ENA]
¡û
>WENV181046460
ODXW01038826
[ODXW] human metagenome; G_DNA_Tongue dorsum
160
69
-
Ser
GGA
[ENA]
¡û
>WENV181058642
ODYL01022513
[ODYL] human metagenome; G_DNA_Tongue dorsum
162
73
-
Ser
GGA
[ENA]
¡û
>WENV181075404
OEAO01168341
[OEAO] human metagenome; G_DNA_Tongue dorsum
158
70
-
Ser
GGA
[ENA]
¡û
>WENV181129455
OEFX01024404
[OEFX] human metagenome; G_DNA_Tongue dorsum
159
68
-
Ser
GGA
[ENA]
¡û
>WENV181141877
OEGT01029448
[OEGT] human metagenome; G_DNA_Throat
652
563
-
Ser
GGA
[ENA]
¡û
>WENV181150184
OEHW01000774
[OEHW] human metagenome; G_DNA_Tongue dorsum
20228
20316
+
Ser
GGA
[ENA]
¡û
>WENV181353937
OFMS01000647
[OFMS] human gut metagenome; human gut
1071
983
-
Ser
GGA
[ENA]
¡û
>WENV181433521
OGDE01011617
[OGDE] metagenome; Human gut stool
149
59
-
Ser
GGA
[ENA]
¡û
>WENV181484578
OGFL01006154
[OGFL] metagenome; Human gut stool
254
165
-
Ser
GGA
[ENA]
¡û
>WENV181525004
OGHI01010419
[OGHI] metagenome; Human gut stool
243
155
-
Ser
GGA
[ENA]
¡û
>WENV181559277
OGIZ01000272
[OGIZ] metagenome; Human gut stool
39402
39491
+
Ser
GGA
[ENA]
¡û
>WENV181594600
OGKU01007240
[OGKU] metagenome; Human gut stool
1424
1513
+
Ser
GGA
[ENA]
¡û
>WENV181619201
OGMD01001875
[OGMD] metagenome; Human gut stool
529
440
-
Ser
GGA
[ENA]
¡û
>WENV181620386
OGME01043193
[OGME] metagenome; Human gut stool
153
242
+
Ser
GGA
[ENA]
¡û
>WENV181636370
OGMZ01008066
[OGMZ] metagenome; Human gut stool
253
164
-
Ser
GGA
[ENA]
¡û
>WENV181932215
OGYR01000107
[OGYR] human gut metagenome; faeces
203
115
-
Ser
GGA
[ENA]
¡û
>WENV181963982
OGZQ01002814
[OGZQ] human gut metagenome; faeces
3569
3657
+
Ser
GGA
[ENA]
¡û
>WENV182031840
OHCT01000518
[OHCT] human gut metagenome; feces
13992
14080
+
Ser
GGA
[ENA]
¡û
>WENV182032416
OHCU01008394
[OHCU] human gut metagenome; feces
243
155
-
Ser
GGA
[ENA]
¡û
>WENV182034420
OHCY01000511
[OHCY] human gut metagenome; feces
13992
14080
+
Ser
GGA
[ENA]
¡û
>WENV182106285
OHII01000513
[OHII] human gut metagenome; feces
13992
14080
+
Ser
GGA
[ENA]
¡û
>WENV182164682
OHMN01001129
[OHMN] human gut metagenome; faeces
220
132
-
Ser
GGA
[ENA]
¡û
>WENV182284587
OHVM01000401
[OHVM] human gut metagenome; feces
243
155
-
Ser
GGA
[ENA]
¡û
>WENV182460601
OINP01003775
[OINP] human gut metagenome; human gut
553
464
-
Ser
GGA
[ENA]
¡û
>WENV182499032
OITR01006868
[OITR] human gut metagenome; human gut
406
317
-
Ser
GGA
[ENA]
¡û
>WENV182628702
OJKQ01028506
[OJKQ] metagenome; faeces
616
704
+
Ser
GGA
[ENA]
¡û
>WENV182706465
OJOW01005917
[OJOW] human gut metagenome; stool sample
329
417
+
Ser
GGA
[ENA]
¡û
>WENV182875202
OKRX01000379
[OKRX] human gut metagenome; faeces
34700
34788
+
Ser
GGA
[ENA]
¡û
>WENV183028542
OLFV01003219
[OLFV] human gut metagenome; faeces
10278
10366
+
Ser
GGA
[ENA]
¡û
>WENV183050620
OLGI01001406
[OLGI] human gut metagenome; faeces
20858
20948
+
Ser
GGA
[ENA]
¡û
>WENV183066961
OLIL01002984
[OLIL] metagenome; faeces
497
409
-
Ser
GGA
[ENA]
¡û
>WENV183085929
OLJF01014704
[OLJF] metagenome; faeces
324
235
-
Ser
GGA
[ENA]
¡û
>WENV183222432
OLQM01001117
[OLQM] human gut metagenome; faeces
29924
30015
+
Ser
GGA
[ENA]
¡û
>WENV183229432
OLQS01001592
[OLQS] human gut metagenome; faeces
351
261
-
Ser
GGA
[ENA]
¡û
>WENV183317288
OLVT01002793
[OLVT] human gut metagenome; faeces
327
239
-
Ser
GGA
[ENA]
¡û
>WENV183525958
ONZU01010596
[ONZU] human gut metagenome; human gut
197
109
-
Ser
GGA
[ENA]
¡û
>WENV183540925
OOAK01000986
[OOAK] human gut metagenome; human gut
22609
22697
+
Ser
GGA
[ENA]
¡û
>WENV183569294
OOCB01027375
[OOCB] human gut metagenome; human gut
1335
1424
+
Ser
GGA
[ENA]
¡û
>WENV183595213
OODC01003518
[OODC] human gut metagenome; human gut
318
230
-
Ser
GGA
[ENA]
¡û
>WENV183605268
OODM01000868
[OODM] human gut metagenome; human gut
15484
15573
+
Ser
GGA
[ENA]
¡û
>WENV183791095
PPYF01424703
[PPYF] human gut metagenome; stool from patient with Crohn's disease
30156
30244
+
Ser
GGA
[ENA]
¡û
>W1810870727
QUCL01000024
Bacillota
Clostridium sp. AM22-16AC [QUCL]
43053
43142
+
Ser
GGA
[ENA]
¡û
>W1810879727
QUJB01000025
Bacillota
Clostridium sp. AM30-24 [QUJB]
35479
35568
+
Ser
GGA
[ENA]
¡û
>W1810918157
QWGK01000023
Bacillota
Clostridiaceae bacterium AF02-42 [QWGK]
178
89
-
Ser
GGA
[ENA]
¡û
>W2010141676
BLTJ01000006
Bacillota
Clostridium sp. C5-48 [BLTJ]
236073
236161
+
Ser
GGA
[ENA]
¡û
>W2010214733
CABHNS010000101
Bacillota
[Clostridium] amygdalinum [CABHNS]
213
124
-
Ser
GGA
[ENA]
¡û
>W2010260109
CABJEW020000043
Bacillota
Clostridiaceae bacterium [CABJEW]
7475
7563
+
Ser
GGA
[ENA]
¡û
>W2010260984
CABJFM020000025
Bacillota
Clostridiaceae bacterium [CABJFM]
35479
35568
+
Ser
GGA
[ENA]
¡û
>W2010274820
CABKVR020000008
Bacillota
Clostridiaceae bacterium [CABKVR]
1596302
1596214
-
Ser
GGA
[ENA]
¡û
>W2010336461
CACYYN010000069
Bacillota
Ruminococcaceae bacterium [CACYYN]
192
103
-
Ser
GGA
[ENA]
¡û
>W2110328562
JADKQA010000005
Bacillota
Clostridium vitabionis YH-T4B42 [JADKQA]
152587
152498
-
Ser
GGA
[ENA]
¡û
>W2110799701
WQPW01000154
Bacillota
Clostridium sp. MCC328 [WQPW]
47771
47860
+
Ser
GGA
[ENA]
¡û
>C241292893
CP130060
Bacillota
Stomatobaculum sp. F0698 [CP130060]
1400943
1400854
-
Ser
GGA
-
¡û
>C161104238
FP929062
Bacillota
butyrate-producing bacterium SS3/4 [FP929062]
2040945
2040856
-
Ser
GGA
-
¡û
>W1710554457
FOIL01000022
Bacillota
[Clostridium] aminophilum [FOIL]
48449
48539
+
Ser
GGA
[ENA]
¡û
>W1710575339
FOZC01000007
Bacillota
[Clostridium] aminophilum [FOZC]
170981
171071
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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