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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.16483 (72 seq.)
>W1711351393
MDCJ01000002
Gammaproteobacteria
Vibrio scophthalmi [MDCJ]
74427
74517
+
Ser
TGA
[ENA]
¡û
>W1711351405
MDCJ01000002
Gammaproteobacteria
Vibrio scophthalmi [MDCJ]
2405127
2405217
+
Ser
TGA
[ENA]
¡û
>W1711351502
MDCJ01000007
Gammaproteobacteria
Vibrio scophthalmi [MDCJ]
958835
958745
-
Ser
TGA
[ENA]
¡û
>C171047082
CP016307
Gammaproteobacteria
Vibrio scophthalmi VS-12 [CP016307, CP016308]
287905
287995
+
Ser
TGA
-
¡û
>C171047138
CP016307
Gammaproteobacteria
Vibrio scophthalmi VS-12 [CP016307, CP016308]
1159636
1159546
-
Ser
TGA
-
¡û
>C171047191
CP016308
Gammaproteobacteria
Vibrio scophthalmi VS-12 [CP016307, CP016308]
1295669
1295579
-
Ser
TGA
-
¡û
>WENV170704506
LLEK01001740
[LLEK] bioreactor metagenome; day79 25degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
225
315
+
Ser
TGA
[ENA]
¢þ
>W141562210
JHZA01000002
Gammaproteobacteria
Enterovibrio calviensis DSM 14347 [JHZA]
487224
487314
+
Ser
TGA
[ENA]
¡û
>W141562241
JHZA01000010
Gammaproteobacteria
Enterovibrio calviensis DSM 14347 [JHZA]
3929
4019
+
Ser
TGA
[ENA]
¡û
>W141562242
JHZA01000010
Gammaproteobacteria
Enterovibrio calviensis DSM 14347 [JHZA]
45932
46022
+
Ser
TGA
[ENA]
¡û
>W141562244
JHZA01000010
Gammaproteobacteria
Enterovibrio calviensis DSM 14347 [JHZA]
62437
62527
+
Ser
TGA
[ENA]
¡û
>W141562245
JHZA01000010
Gammaproteobacteria
Enterovibrio calviensis DSM 14347 [JHZA]
128334
128424
+
Ser
TGA
[ENA]
¡û
>W1910679106
MCVB01000155
Gammaproteobacteria
Enterovibrio norvegicus 10N.286.48.F3 [MCVB]
73432
73522
+
Ser
TGA
[ENA]
¡û
>W1910679125
MCVB01000174
Gammaproteobacteria
Enterovibrio norvegicus 10N.286.48.F3 [MCVB]
22454
22364
-
Ser
TGA
[ENA]
¡û
>W1910680261
MCVQ01000108
Gammaproteobacteria
Enterovibrio norvegicus 10N.286.46.C4 [MCVQ]
92116
92026
-
Ser
TGA
[ENA]
¡û
>W1910680262
MCVQ01000108
Gammaproteobacteria
Enterovibrio norvegicus 10N.286.46.C4 [MCVQ]
286
196
-
Ser
TGA
[ENA]
¡û
>W1910680291
MCVR01000069
Gammaproteobacteria
Enterovibrio norvegicus 10N.286.46.C3 [MCVR]
12386
12476
+
Ser
TGA
[ENA]
¡û
>W1910680308
MCVR01000089
Gammaproteobacteria
Enterovibrio norvegicus 10N.286.46.C3 [MCVR]
168593
168503
-
Ser
TGA
[ENA]
¡û
>W1910680309
MCVR01000089
Gammaproteobacteria
Enterovibrio norvegicus 10N.286.46.C3 [MCVR]
74947
74857
-
Ser
TGA
[ENA]
¡û
>W1910680311
MCVR01000089
Gammaproteobacteria
Enterovibrio norvegicus 10N.286.46.C3 [MCVR]
26385
26295
-
Ser
TGA
[ENA]
¡û
>W1910680341
MCVR01000135
Gammaproteobacteria
Enterovibrio norvegicus 10N.286.46.C3 [MCVR]
33747
33837
+
Ser
TGA
[ENA]
¡û
>W1910685809
MCYQ01000007
Gammaproteobacteria
Enterovibrio norvegicus 10N.261.49.F5 [MCYQ]
230060
230150
+
Ser
TGA
[ENA]
¡û
>W1910685829
MCYQ01000023
Gammaproteobacteria
Enterovibrio norvegicus 10N.261.49.F5 [MCYQ]
17808
17718
-
Ser
TGA
[ENA]
¡û
>W1910685843
MCYQ01000033
Gammaproteobacteria
Enterovibrio norvegicus 10N.261.49.F5 [MCYQ]
188474
188384
-
Ser
TGA
[ENA]
¡û
>W1910685846
MCYQ01000033
Gammaproteobacteria
Enterovibrio norvegicus 10N.261.49.F5 [MCYQ]
52200
52110
-
Ser
TGA
[ENA]
¡û
>W1910688604
MDAD01000001
Gammaproteobacteria
Enterovibrio norvegicus 10N.261.45.C6 [MDAD]
73616
73706
+
Ser
TGA
[ENA]
¡û
>W1910688630
MDAD01000045
Gammaproteobacteria
Enterovibrio norvegicus 10N.261.45.C6 [MDAD]
20043
19953
-
Ser
TGA
[ENA]
¡û
>W1910688862
MDAG01000012
Gammaproteobacteria
Enterovibrio norvegicus 10N.261.45.B2 [MDAG]
26920
27010
+
Ser
TGA
[ENA]
¡û
>W1910688872
MDAG01000013
Gammaproteobacteria
Enterovibrio norvegicus 10N.261.45.B2 [MDAG]
369363
369273
-
Ser
TGA
[ENA]
¡û
>W1910688873
MDAG01000013
Gammaproteobacteria
Enterovibrio norvegicus 10N.261.45.B2 [MDAG]
277415
277325
-
Ser
TGA
[ENA]
¡û
>W1910688876
MDAG01000013
Gammaproteobacteria
Enterovibrio norvegicus 10N.261.45.B2 [MDAG]
138070
137980
-
Ser
TGA
[ENA]
¡û
>W1910689244
MDAL01000008
Gammaproteobacteria
Enterovibrio norvegicus 10N.261.45.A10 [MDAL]
133982
134072
+
Ser
TGA
[ENA]
¡û
>W1910689284
MDAL01000029
Gammaproteobacteria
Enterovibrio norvegicus 10N.261.45.A10 [MDAL]
2212
2122
-
Ser
TGA
[ENA]
¡û
>W1910689307
MDAL01000049
Gammaproteobacteria
Enterovibrio norvegicus 10N.261.45.A10 [MDAL]
11915
11825
-
Ser
TGA
[ENA]
¡û
>W1911743589
QVMU01000005
Gammaproteobacteria
Vibrio sinensis BEI233 [QVMU]
227793
227703
-
Ser
TGA
[ENA]
¡û
>W1911743601
QVMU01000009
Gammaproteobacteria
Vibrio sinensis BEI233 [QVMU]
31913
31823
-
Ser
TGA
[ENA]
¡û
>W1911743626
QVMU01000020
Gammaproteobacteria
Vibrio sinensis BEI233 [QVMU]
19586
19676
+
Ser
TGA
[ENA]
¡û
>W1511402643
JTKH01000005
Gammaproteobacteria
Vibrio renipiscarius DCR 1-4-2 [JTKH]
114995
114905
-
Ser
TGA
[ENA]
¡û
>W1511402648
JTKH01000006
Gammaproteobacteria
Vibrio renipiscarius DCR 1-4-2 [JTKH]
271522
271432
-
Ser
TGA
[ENA]
¡û
>W1511402721
JTKH01000024
Gammaproteobacteria
Vibrio renipiscarius DCR 1-4-2 [JTKH]
326414
326324
-
Ser
TGA
[ENA]
¡û
>W1511402722
JTKH01000024
Gammaproteobacteria
Vibrio renipiscarius DCR 1-4-2 [JTKH]
269042
268952
-
Ser
TGA
[ENA]
¡û
>W1511402770
JTKI01000012
Gammaproteobacteria
Vibrio renipiscarius DCR 1-4-12 [JTKI]
242855
242765
-
Ser
TGA
[ENA]
¡û
>W1511402801
JTKI01000020
Gammaproteobacteria
Vibrio renipiscarius DCR 1-4-12 [JTKI]
611282
611372
+
Ser
TGA
[ENA]
¡û
>W1511402802
JTKI01000021
Gammaproteobacteria
Vibrio renipiscarius DCR 1-4-12 [JTKI]
266020
265930
-
Ser
TGA
[ENA]
¡û
>W1511402812
JTKI01000026
Gammaproteobacteria
Vibrio renipiscarius DCR 1-4-12 [JTKI]
16409
16499
+
Ser
TGA
[ENA]
¡û
>W11175208
AFWD01000052
Gammaproteobacteria
Vibrio sp. N418 [AFWD]
106540
106450
-
Ser
TGA
[ENA]
¡û
>W11175210
AFWD01000058
Gammaproteobacteria
Vibrio sp. N418 [AFWD]
101217
101127
-
Ser
TGA
[ENA]
¡û
>W11175226
AFWD01000089
Gammaproteobacteria
Vibrio sp. N418 [AFWD]
14973
15063
+
Ser
TGA
[ENA]
¡û
>W11175247
AFWE01000070
Gammaproteobacteria
Vibrio scophthalmi LMG 19158 [AFWE]
59001
58911
-
Ser
TGA
[ENA]
¡û
>W11175280
AFWE01000171
Gammaproteobacteria
Vibrio scophthalmi LMG 19158 [AFWE]
5112
5202
+
Ser
TGA
[ENA]
¡û
>W11175282
AFWE01000191
Gammaproteobacteria
Vibrio scophthalmi LMG 19158 [AFWE]
188
278
+
Ser
TGA
[ENA]
¡û
>W11175323
AFWF01000108
Gammaproteobacteria
Vibrio ichthyoenteri ATCC 700023 [AFWF]
6474
6564
+
Ser
TGA
[ENA]
¡û
>W11175350
AFWF01000218
Gammaproteobacteria
Vibrio ichthyoenteri ATCC 700023 [AFWF]
102
192
+
Ser
TGA
[ENA]
¡û
>C161097113
CP016414
Gammaproteobacteria
Vibrio scophthalmi VS-05 [CP016414, CP016415]
2085642
2085732
+
Ser
TGA
[Ensembl]
¡û
>C161097156
CP016414
Gammaproteobacteria
Vibrio scophthalmi VS-05 [CP016414, CP016415]
2936394
2936304
-
Ser
TGA
[Ensembl]
¡û
>C161097179
CP016415
Gammaproteobacteria
Vibrio scophthalmi VS-05 [CP016414, CP016415]
821514
821424
-
Ser
TGA
-
¡û
>W121070194
AJWN01000003
Gammaproteobacteria
Enterovibrio norvegicus FF-454 [AJWN]
72281
72191
-
Ser
TGA
[ENA]
¡û
>W121070221
AJWN01000024
Gammaproteobacteria
Enterovibrio norvegicus FF-454 [AJWN]
12195
12105
-
Ser
TGA
[ENA]
¡û
>W121071644
AJYD01000012
Gammaproteobacteria
Enterovibrio norvegicus FF-33 [AJYD]
39164
39074
-
Ser
TGA
[ENA]
¡û
>W121071649
AJYD01000038
Gammaproteobacteria
Enterovibrio norvegicus FF-33 [AJYD]
114344
114254
-
Ser
TGA
[ENA]
¡û
>W121071688
AJYD01000070
Gammaproteobacteria
Enterovibrio norvegicus FF-33 [AJYD]
10615
10525
-
Ser
TGA
[ENA]
¡û
>W121071690
AJYD01000071
Gammaproteobacteria
Enterovibrio norvegicus FF-33 [AJYD]
11903
11813
-
Ser
TGA
[ENA]
¡û
>W121071719
AJYE01000055
Gammaproteobacteria
Enterovibrio norvegicus FF-162 [AJYE]
7515
7425
-
Ser
TGA
[ENA]
¡û
>W121071721
AJYE01000106
Gammaproteobacteria
Enterovibrio norvegicus FF-162 [AJYE]
1247
1337
+
Ser
TGA
[ENA]
¡û
>W121071799
AJYF01000315
Gammaproteobacteria
Enterovibrio norvegicus FF-85 [AJYF]
21023
21113
+
Ser
TGA
[ENA]
¡û
>W121071821
AJYG01000011
Gammaproteobacteria
Enterovibrio norvegicus 1F-211 [AJYG]
85069
85159
+
Ser
TGA
[ENA]
¡û
>W121071822
AJYG01000016
Gammaproteobacteria
Enterovibrio norvegicus 1F-211 [AJYG]
83747
83837
+
Ser
TGA
[ENA]
¡û
>W121071874
AJYH01000027
Gammaproteobacteria
Enterovibrio norvegicus 1F-230 [AJYH]
135228
135318
+
Ser
TGA
[ENA]
¡û
>W121071910
AJYH01000265
Gammaproteobacteria
Enterovibrio norvegicus 1F-230 [AJYH]
23640
23730
+
Ser
TGA
[ENA]
¡û
>W1710572409
FOWR01000007
Gammaproteobacteria
Enterovibrio norvegicus DSM 15893 [FOWR]
95370
95280
-
Ser
TGA
[ENA]
¡û
>W1710572412
FOWR01000008
Gammaproteobacteria
Enterovibrio norvegicus DSM 15893 [FOWR]
2283
2193
-
Ser
TGA
[ENA]
¡û
>W1710572448
FOWR01000045
Gammaproteobacteria
Enterovibrio norvegicus DSM 15893 [FOWR]
28140
28230
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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