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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.165016 (5 seq.)
>WENV181368517
OFQL01015209
[OFQL] freshwater metagenome; Freshwater Lake
296
220
-
Pro
TGG
[ENA]
¡û
>WENV181845897
OGVX01011681
[OGVX] freshwater metagenome; freshwater
507
433
-
Pro
TGG
[ENA]
¡û
>WENV181846256
OGVX01031152
[OGVX] freshwater metagenome; freshwater
187
261
+
Pro
TGG
[ENA]
¡û
>WENV182865819
OKRQ01003456
[OKRQ] freshwater metagenome; freshwater
1209
1283
+
Pro
TGG
[ENA]
¡û
>WENV034038
AACY021573891
Marine microbial communities from Global Ocean Sampling (GOS)
481
559
+
Pro
TGG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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