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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.165175 (24 seq.)
>W131180631
ARNG01000083
Gammaproteobacteria
Arsukibacterium perlucidum DSM 18276 [ARNG]
226132
226056
-
Arg
ACG
[ENA]
¡û
>w014234
AAOH01000006
Gammaproteobacteria
Pseudoalteromonas tunicata D2 [AAOH]
56569
56647
+
Arg
ACG
[ENA]
¡û
>w014233
AAOH01000006
Gammaproteobacteria
Pseudoalteromonas tunicata D2 [AAOH]
56434
56512
+
Arg
ACG
[ENA]
¡û
>w014232
AAOH01000006
Gammaproteobacteria
Pseudoalteromonas tunicata D2 [AAOH]
56299
56377
+
Arg
ACG
[ENA]
¡û
>WENV170924018
MDTG01058660
[MDTG] marine metagenome; seawater
157736
157660
-
Arg
ACG
[ENA]
¢þ
>C181010422
CP011032
Gammaproteobacteria
Pseudoalteromonas tunicata D2 [CP011032,CP011033]
1010115
1010191
+
Arg
ACG
-
¡û
>C181010423
CP011032
Gammaproteobacteria
Pseudoalteromonas tunicata D2 [CP011032,CP011033]
1010250
1010326
+
Arg
ACG
-
¡û
>C181010424
CP011032
Gammaproteobacteria
Pseudoalteromonas tunicata D2 [CP011032,CP011033]
1010385
1010461
+
Arg
ACG
-
¡û
>C191083296
CP031961
Gammaproteobacteria
Pseudoalteromonas tunicata D2 [CP031961,CP031962]
308351
308427
+
Arg
ACG
-
¡û
>C191083297
CP031961
Gammaproteobacteria
Pseudoalteromonas tunicata D2 [CP031961,CP031962]
308486
308562
+
Arg
ACG
-
¡û
>C191083298
CP031961
Gammaproteobacteria
Pseudoalteromonas tunicata D2 [CP031961,CP031962]
308621
308697
+
Arg
ACG
-
¡û
>C191129066
CP034683
Gammaproteobacteria
Rheinheimera mangrovi LHK132 [CP034683]
964286
964362
+
Arg
ACG
-
¡û
>C191129067
CP034683
Gammaproteobacteria
Rheinheimera mangrovi LHK132 [CP034683]
964402
964478
+
Arg
ACG
-
¡û
>W1910930920
NISX01000004
Gammaproteobacteria
Lacimicrobium alkaliphilum X13M-12 [NISX]
26154
26078
-
Arg
ACG
[ENA]
¡û
>W1910930944
NISX01000009
Gammaproteobacteria
Lacimicrobium alkaliphilum X13M-12 [NISX]
61262
61186
-
Arg
ACG
[ENA]
¡û
>W1511566726
LAHO01000001
Gammaproteobacteria
Arsukibacterium ikkense GCM72 [LAHO]
276308
276384
+
Arg
ACG
[ENA]
¡û
>W1511566812
LAHP01000012
Gammaproteobacteria
Arsukibacterium sp. MJ3 [LAHP]
67330
67406
+
Arg
ACG
[ENA]
¡û
>W1511566813
LAHP01000012
Gammaproteobacteria
Arsukibacterium sp. MJ3 [LAHP]
67440
67516
+
Arg
ACG
[ENA]
¡û
>W1511573507
LAMX01000048
Gammaproteobacteria
Rheinheimera sp. KL1 [LAMX]
17495
17419
-
Arg
ACG
[ENA]
¡û
>W11162843
AFHI01000002
Gammaproteobacteria
Rheinheimera sp. A13L [AFHI]
150125
150201
+
Arg
ACG
[ENA]
¡û
>W11162844
AFHI01000002
Gammaproteobacteria
Rheinheimera sp. A13L [AFHI]
150242
150318
+
Arg
ACG
[ENA]
¡û
>WENV051501
AACY022960030
Marine microbial communities from Global Ocean Sampling (GOS)
112
190
+
Arg
ACG
[ENA]
>WENV051502
AACY022960030
Marine microbial communities from Global Ocean Sampling (GOS)
228
306
+
Arg
ACG
[ENA]
>WENV075898
AACY024062310
Marine microbial communities from Global Ocean Sampling (GOS)
488
410
-
Arg
ACG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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