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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.165250 (17 seq.)
>C010024
CP000148
Thermodesulfobacteriota
Geobacter metallireducens GS-15 [CP000148]
2090464
2090388
-
Arg
TCT
[Ensembl]
¡û
>C010125
AE017180
Thermodesulfobacteriota
Geobacter sulfurreducens PCA [AE017180]
1960064
1959988
-
Arg
TCT
[Ensembl]
¡û
>C191000634
AP017912
Thermodesulfobacteriota
Geobacter sulfurreducens YM18 [AP017912]
1923816
1923740
-
Arg
TCT
-
¡û
>W09100197
AAAS03000002
Thermodesulfobacteriota
Geobacter metallireducens GS-15 [AAAS]
15395
15471
+
Arg
TCT
[ENA]
¡û
>C151059728
CP009788
Thermodesulfobacteriota
Geobacter pickeringii G13 [CP009788]
1581989
1582065
+
Arg
TCT
[Ensembl]
¡û
>W2110301463
JADBFD010000016
Thermodesulfobacteriota
Geobacter anodireducens PheS2 [JADBFD]
40825
40749
-
Arg
TCT
[ENA]
¡û
>W2110595620
JAHDIW010000002
Thermodesulfobacteriota
Geobacter grbiciae DSM 13689 [JAHDIW]
238956
238880
-
Arg
TCT
[ENA]
¡û
>C211290243
CP071382
Thermodesulfobacteriota
Geobacter sp. Jerry-YX [CP071382]
3069948
3069872
-
Arg
TCT
-
¡û
>C211333156
CP074693
Thermodesulfobacteriota
Geobacter sulfurreducens YM35 [CP074693]
1950143
1950067
-
Arg
TCT
-
¡û
>C211363052
CP078092
Thermodesulfobacteriota
Geobacter sulfurreducens PCA_v2 [CP078092]
1961756
1961680
-
Arg
TCT
-
¡û
>C241013025
AP028061
Thermodesulfobacteriota
Geobacter sulfurreducens subsp. ethanolicus OSK2A [AP028061]
2021234
2021310
+
Arg
TCT
-
¡û
>C241016119
AP028967
Thermodesulfobacteriota
Geobacter sp. 60473 [AP028967]
1385120
1385044
-
Arg
TCT
-
¡û
>C10107467
CP002031
Thermodesulfobacteriota
Geobacter sulfurreducens KN400 [CP002031]
1927219
1927143
-
Arg
TCT
[Ensembl]
¡û
>WENV042821
AACY022267910
Marine microbial communities from Global Ocean Sampling (GOS)
336
414
+
Arg
TCT
[ENA]
>W1511500986
JXBL01000001
Thermodesulfobacteriota
Geobacter soli GSS01 [JXBL]
1301313
1301389
+
Arg
TCT
[ENA]
¡û
>C161080236
CP014963
Thermodesulfobacteriota
Geobacter anodireducens SD-1 [CP014963]
1753027
1753103
+
Arg
TCT
-
¡û
>W121010714
AGJM01000003
Thermodesulfobacteriota
Geobacter metallireducens RCH3 [AGJM]
115359
115435
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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