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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.165266 (32 seq.)
>W1710852878
LLWC01000022
Alphaproteobacteria
Pseudovibrio hongkongensis [LLWC]
539784
539708
-
Met
CAT
[ENA]
¡û
>W1711827065
MXQE01000030
Alphaproteobacteria
Labrenzia sp. CP4 [MXQE]
64010
63934
-
Met
CAT
[ENA]
¡û
>W131231519
AUIM01000007
Alphaproteobacteria
Stappia stellulata DSM 5886 [AUIM]
200753
200677
-
Met
CAT
[ENA]
¡û
>w020442
AAUW01000011
Alphaproteobacteria
Roseibium aggregatum IAM 12614 [AAUW]
178555
178477
-
Met
CAT
[ENA]
¡û
>C171097453
CP019630
Alphaproteobacteria
Roseibium aggregatum RMAR6-6 [CP019630]
4388719
4388795
+
Met
CAT
-
¡û
>W141152615
AXBY01000002
Alphaproteobacteria
Labrenzia sp. C1B10 [AXBY]
24315
24239
-
Met
CAT
[ENA]
¡û
>W141152956
AXCE01000061
Alphaproteobacteria
Labrenzia sp. C1B70 [AXCE]
24315
24239
-
Met
CAT
[ENA]
¡û
>WENV170014002
AVFP01001422
[AVFP] microbial mat metagenome; pink berry consortia of the Sippewissett salt marsh
894
818
-
Met
CAT
[ENA]
¢þ
>WENV170728453
LULE01032354
[LULE] marine metagenome; Red Sea water column Station 192 - depth 10m
191
267
+
Met
CAT
[ENA]
¢þ
>WENV170779792
LZQR01000865
[LZQR] oil field metagenome; sample BH-FW-24 from oil reservoir
1071
1147
+
Met
CAT
[ENA]
¢þ
>WENV170810348
MDSW01147450
[MDSW] marine metagenome; seawater
1225
1149
-
Met
CAT
[ENA]
¢þ
>WENV170840662
MDSZ01208922
[MDSZ] marine metagenome; seawater
10283
10207
-
Met
CAT
[ENA]
¢þ
>WENV170901128
MDTD01165338
[MDTD] marine metagenome; seawater
20
96
+
Met
CAT
[ENA]
¢þ
>WENV170926461
MDTG01100277
[MDTG] marine metagenome; seawater
226
302
+
Met
CAT
[ENA]
¢þ
>WENV170962245
MRWF01010018
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
175
251
+
Met
CAT
[ENA]
¢þ
>WENV170962321
MRWF01012069
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
64034
63958
-
Met
CAT
[ENA]
¢þ
>WENV170963701
MRWG01000545
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
7468
7544
+
Met
CAT
[ENA]
¢þ
>WENV170963773
MRWG01000722
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
28590
28514
-
Met
CAT
[ENA]
¢þ
>C181067737
CP022529
Alphaproteobacteria
Labrenzia sp. VG12 [CP022529]
2585394
2585318
-
Met
CAT
-
¡û
>W09118257
ACCU01000014
Alphaproteobacteria
Roseibium alexandrii DFL-11 [ACCU]
462638
462562
-
Met
CAT
[ENA]
¡û
>W1911497521
OCPC01000001
Alphaproteobacteria
Hoeflea halophila KCTC 23107 [OCPC]
945368
945292
-
Met
CAT
[ENA]
¡û
>W1911532395
OGUZ01000009
Alphaproteobacteria
Labrenzia sp. EL143 [OGUZ]
433
357
-
Met
CAT
[ENA]
¡û
>C151083078
CP011479
Alphaproteobacteria
Hoeflea sp. IMCC20628 [CP011479]
825208
825284
+
Met
CAT
[Ensembl]
¡û
>C11117252
CP002568
Alphaproteobacteria
Polymorphum gilvum SL003B-26A1 [CP002568]
1363995
1364071
+
Met
CAT
[Ensembl]
¡û
>C161037908
CP011927
Alphaproteobacteria
Labrenzia sp. CP4 [CP011927]
1785235
1785311
+
Met
CAT
-
¡û
>W1610091981
CXST01000001
Alphaproteobacteria
Roseibium aggregatum aggregata [CXST]
2072034
2071958
-
Met
CAT
[ENA]
¡û
>W1610092262
CXWE01000005
Alphaproteobacteria
Roseibium album alba [CXWE]
354142
354066
-
Met
CAT
[ENA]
¡û
>W1610716017
LLWC01000022
Alphaproteobacteria
Pseudovibrio hongkongensis [LLWC]
539784
539708
-
Met
CAT
[ENA]
¡û
>W1710095338
CXST01000001
Alphaproteobacteria
Roseibium aggregatum aggregata [CXST]
2072034
2071958
-
Met
CAT
[ENA]
¡û
>W1710095619
CXWE01000005
Alphaproteobacteria
Roseibium album alba [CXWE]
354142
354066
-
Met
CAT
[ENA]
¡û
>W1710571148
FOVR01000006
Alphaproteobacteria
Cohaesibacter marisflavi [FOVR]
146887
146811
-
Met
CAT
[ENA]
¡û
>W1710660271
JXMT01000081
Alphaproteobacteria
Roseibium aggregatum aggregata [JXMT]
14811
14887
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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