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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.165266 (9 seq.)
>WENV180367743
OBOF01002413
[OBOF] marine metagenome; ENVO:00002010
237
311
+
Arg
TCT
[ENA]
¡û
>WENV180382136
OBOS01122337
[OBOS] marine metagenome; ENVO 00002150
59
133
+
Arg
TCT
[ENA]
¡û
>WENV180593095
OCOX01000684
[OCOX] marine metagenome; ENVO:00002010
2232
2158
-
Arg
TCT
[ENA]
¡û
>WENV170151602
CEOD01011788
[CEOD] marine metagenome genome assembly TARA_036_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
129
203
+
Arg
TCT
[ENA]
¡û
>WENV170156599
CEOI01062027
[CEOI] marine metagenome genome assembly TARA_036_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
10
84
+
Arg
TCT
[ENA]
¡û
>WENV170516890
CEWC01024545
[CEWC] marine metagenome genome assembly TARA_036_SRF_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
12954
12880
-
Arg
TCT
[ENA]
¡û
>WENV170593517
FUFK010896253
[FUFK] metagenome; unknown
52753
52827
+
Arg
TCT
[ENA]
¡û
>WENV170605818
FUWD010549525
[FUWD] metagenome; unknown
83
159
+
Arg
TCT
[ENA]
¡û
>WENV043562
AACY022335369
Marine microbial communities from Global Ocean Sampling (GOS)
696
774
+
Arg
TCT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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