This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.165559 (75 seq.)
>W131227531
AUFF01000004
Gammaproteobacteria
Arenimonas composti DSM 18010 [AUFF]
29221
29145
-
Arg
TCT
[ENA]
¡û
>WENV180102830
OAOZ01025369
[OAOZ] marine metagenome; ENVO:00002010
462
386
-
Arg
TCT
[ENA]
¡û
>WENV180114139
OAPR01177770
[OAPR] marine metagenome; seawater
243
167
-
Arg
TCT
[ENA]
¡û
>WENV180214647
OBAP01027697
[OBAP] marine metagenome; ENVO:00002010 for 'seawater
164
88
-
Arg
TCT
[ENA]
¡û
>WENV180357747
OBNN01087318
[OBNN] marine metagenome; Coastal water
262
186
-
Arg
TCT
[ENA]
¡û
>WENV180365677
OBOC01010711
[OBOC] marine metagenome; ocean water
524
448
-
Arg
TCT
[ENA]
¡û
>WENV180377655
OBON01071818
[OBON] marine metagenome; sea water
36
112
+
Arg
TCT
[ENA]
¡û
>WENV180594101
OCOY01037213
[OCOY] marine metagenome; ENVO:00002010
229
305
+
Arg
TCT
[ENA]
¡û
>WENV180650510
OCSY01049742
[OCSY] marine metagenome; 30 L Plastic container
219
295
+
Arg
TCT
[ENA]
¡û
>WENV181120614
OEFK01017273
[OEFK] marine metagenome; ENVO:00002010 seawater
299
223
-
Arg
TCT
[ENA]
¡û
>WENV181325484
OFLJ01001477
[OFLJ] seawater metagenome; seawater
759
683
-
Arg
TCT
[ENA]
¡û
>WENV182548338
OJBV01017609
[OJBV] seawater metagenome; Sea water
658
582
-
Arg
TCT
[ENA]
¡û
>WENV182548818
OJBX01000247
[OJBX] seawater metagenome; Sea water
3520
3596
+
Arg
TCT
[ENA]
¡û
>WENV182553095
OJCR01000017
[OJCR] seawater metagenome; Sea water
47706
47782
+
Arg
TCT
[ENA]
¡û
>WENV182557961
OJDL01001051
[OJDL] seawater metagenome; Sea water
6475
6551
+
Arg
TCT
[ENA]
¡û
>WENV182558989
OJDN01032292
[OJDN] seawater metagenome; Sea water
473
397
-
Arg
TCT
[ENA]
¡û
>WENV182563716
OJEC01020197
[OJEC] seawater metagenome; Sea water
186
262
+
Arg
TCT
[ENA]
¡û
>WENV182566024
OJEI01011140
[OJEI] seawater metagenome; Sea water
114
38
-
Arg
TCT
[ENA]
¡û
>WENV182567483
OJEO01002004
[OJEO] seawater metagenome; Sea water
144
68
-
Arg
TCT
[ENA]
¡û
>WENV182572173
OJFL01000726
[OJFL] seawater metagenome; Sea water
5487
5563
+
Arg
TCT
[ENA]
¡û
>WENV182573169
OJFP01000262
[OJFP] seawater metagenome; Sea water
31433
31357
-
Arg
TCT
[ENA]
¡û
>WENV182574644
OJFS01000222
[OJFS] seawater metagenome; Sea water
7532
7456
-
Arg
TCT
[ENA]
¡û
>WENV182578719
OJGP01000656
[OJGP] seawater metagenome; Sea water
5801
5877
+
Arg
TCT
[ENA]
¡û
>WENV182579124
OJGS01000750
[OJGS] seawater metagenome; Sea water
831
755
-
Arg
TCT
[ENA]
¡û
>WENV182580344
OJGW01000040
[OJGW] seawater metagenome; Sea water
10636
10712
+
Arg
TCT
[ENA]
¡û
>WENV182584537
OJHG01001215
[OJHG] seawater metagenome; Sea water
447
371
-
Arg
TCT
[ENA]
¡û
>WENV182586345
OJHK01000100
[OJHK] seawater metagenome; Sea water
4622
4698
+
Arg
TCT
[ENA]
¡û
>WENV182590832
OJIK01001123
[OJIK] seawater metagenome; Sea water
6785
6861
+
Arg
TCT
[ENA]
¡û
>WENV182592668
OJIR01009067
[OJIR] seawater metagenome; Sea water
475
551
+
Arg
TCT
[ENA]
¡û
>WENV182941702
OKVG01005491
[OKVG] human gut metagenome; human gut
2139
2215
+
Arg
TCT
[ENA]
¡û
>WENV183056220
OLHI01001862
[OLHI] seawater metagenome; Sea water
2695
2771
+
Arg
TCT
[ENA]
¡û
>WENV183064880
OLII01002138
[OLII] seawater metagenome; Sea water
784
860
+
Arg
TCT
[ENA]
¡û
>WENV183619336
OOFQ01001469
[OOFQ] marine metagenome; seawater
759
683
-
Arg
TCT
[ENA]
¡û
>WENV170009848
APMI01003864
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
20297
20373
+
Arg
TCT
[ENA]
¡û
>WENV170010377
APMI01015377
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
12378
12302
-
Arg
TCT
[ENA]
¡û
>WENV170010433
APMI01017069
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
893
817
-
Arg
TCT
[ENA]
¡û
>WENV170018601
BBPD01000115
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
7390
7466
+
Arg
TCT
[ENA]
¡û
>WENV170567782
FLMP01005511
[FLMP] seawater metagenome; seawater
3410
3334
-
Arg
TCT
[ENA]
¡û
>WENV170568994
FLMP01106434
[FLMP] seawater metagenome; seawater
37
113
+
Arg
TCT
[ENA]
¡û
>WENV170949346
MEHZ011404403
[MEHZ] marine metagenome; marine surface water
1674
1598
-
Arg
TCT
[ENA]
¡û
>C181000999
AP014940
Gammaproteobacteria
Lysobacter enzymogenes M497-1 [AP014940]
1985591
1985667
+
Arg
TCT
-
¡û
>C181180365
CP029556
Gammaproteobacteria
Lysobacter oculi 83-4 [CP029556]
564730
564806
+
Arg
TCT
-
¡û
>C181200070
CP031413
Gammaproteobacteria
Lysobacter sp. TY2-98 [CP031413]
1817900
1817824
-
Arg
TCT
-
¡û
>W1911405250
NWQM01000001
Gammaproteobacteria
Xanthomonadaceae bacterium NML03-0222 [NWQM]
243683
243759
+
Arg
TCT
[ENA]
¡û
>W1911405309
NWQN01000021
Gammaproteobacteria
Xanthomonadaceae bacterium NML75-0749 [NWQN]
27221
27145
-
Arg
TCT
[ENA]
¡û
>W1911405360
NWQO01000002
Gammaproteobacteria
Xanthomonadaceae bacterium NML91-0268 [NWQO]
249872
249948
+
Arg
TCT
[ENA]
¡û
>W1911405408
NWQP01000017
Gammaproteobacteria
Xanthomonadaceae bacterium NML71-0210 [NWQP]
1796
1872
+
Arg
TCT
[ENA]
¡û
>W1911405463
NWQQ01000021
Gammaproteobacteria
Xanthomonadaceae bacterium NML95-0200 [NWQQ]
217662
217586
-
Arg
TCT
[ENA]
¡û
>W1911405503
NWQR01000002
Gammaproteobacteria
Xanthomonadaceae bacterium NML08-0793 [NWQR]
409740
409664
-
Arg
TCT
[ENA]
¡û
>W1911405535
NWQS01000008
Gammaproteobacteria
Xanthomonadaceae bacterium NML120232 [NWQS]
20168
20092
-
Arg
TCT
[ENA]
¡û
>W1911405573
NWQT01000007
Gammaproteobacteria
Xanthomonadaceae bacterium NML07-0707 [NWQT]
50513
50437
-
Arg
TCT
[ENA]
¡û
>SRA1002312
SRR001308.369940
Metagenomic characterization of a wastewater treatment plant (SRP000180)
166
90
-
Arg
TCT
[SRA]
>C151077903
CP011144
Gammaproteobacteria
Pseudoxanthomonas suwonensis J1 [CP011144]
509314
509390
+
Arg
TCT
[Ensembl]
¡û
>W2011135243
NWQM01000001
Gammaproteobacteria
Xanthomonadaceae bacterium NML03-0222 [NWQM]
243683
243759
+
Arg
TCT
[ENA]
¡û
>W2011135302
NWQN01000021
Gammaproteobacteria
Xanthomonadaceae bacterium NML75-0749 [NWQN]
27221
27145
-
Arg
TCT
[ENA]
¡û
>W2011135353
NWQO01000002
Gammaproteobacteria
Xanthomonadaceae bacterium NML91-0268 [NWQO]
249872
249948
+
Arg
TCT
[ENA]
¡û
>W2011135401
NWQP01000017
Gammaproteobacteria
Xanthomonadaceae bacterium NML71-0210 [NWQP]
1796
1872
+
Arg
TCT
[ENA]
¡û
>W2011135456
NWQQ01000021
Gammaproteobacteria
Xanthomonadaceae bacterium NML95-0200 [NWQQ]
217662
217586
-
Arg
TCT
[ENA]
¡û
>W2011135496
NWQR01000002
Gammaproteobacteria
Xanthomonadaceae bacterium NML08-0793 [NWQR]
409740
409664
-
Arg
TCT
[ENA]
¡û
>W2011135528
NWQS01000008
Gammaproteobacteria
Xanthomonadaceae bacterium NML120232 [NWQS]
20168
20092
-
Arg
TCT
[ENA]
¡û
>W2011135566
NWQT01000007
Gammaproteobacteria
Xanthomonadaceae bacterium NML07-0707 [NWQT]
50513
50437
-
Arg
TCT
[ENA]
¡û
>W2011416848
RFLY01000002
Gammaproteobacteria
Lysobacter sp. 4284/11 [RFLY]
111838
111914
+
Arg
TCT
[ENA]
¡û
>W2011705682
SWJS01000005
Gammaproteobacteria
Xanthomonadaceae bacterium CU05-9 [SWJS]
70979
71055
+
Arg
TCT
[ENA]
¡û
>W2110048376
BMXY01000001
Gammaproteobacteria
Lysobacter xinjiangensis KCTC 22558 [BMXY]
1580215
1580139
-
Arg
TCT
[ENA]
¡û
>C241138012
CP049864
Gammaproteobacteria
Lysobacter sp. HDW10 [CP049864]
1500747
1500823
+
Arg
TCT
-
¡û
>C241310076
CP133568
Gammaproteobacteria
Lysobacter yananisis SNNU513 [CP133568]
3714591
3714667
+
Arg
TCT
-
¡û
>C241317306
CP134270
Gammaproteobacteria
Lysobacter capsici XL1 [CP134270]
1944021
1944097
+
Arg
TCT
-
¡û
>WENV055662
AACY023234967
Marine microbial communities from Global Ocean Sampling (GOS)
1393
1317
-
Arg
TCT
[ENA]
>C161031591
CP011130
Gammaproteobacteria
Lysobacter capsici 55 [CP011130]
2006694
2006770
+
Arg
TCT
[Ensembl]
¡û
>W1610626387
LICD01000105
Gammaproteobacteria
OM182 bacterium BACL3 MAG-120619-bin3 [LICD]
179
103
-
Arg
TCT
[ENA]
¡û
>W1610627172
LIDH01000735
Gammaproteobacteria
OM182 bacterium BACL3 MAG-120531-bin86 [LIDH]
147
71
-
Arg
TCT
[ENA]
¡û
>W1710529749
FNOG01000003
Gammaproteobacteria
Lysobacter enzymogenes [FNOG]
522770
522846
+
Arg
TCT
[ENA]
¡û
>W1710595316
FTLW01000004
Gammaproteobacteria
Lysobacter tolerans [FTLW]
28831
28907
+
Arg
TCT
[ENA]
¡û
>W1710757514
LICD01000105
Gammaproteobacteria
OM182 bacterium BACL3 MAG-120619-bin3 [LICD]
179
103
-
Arg
TCT
[ENA]
¡û
>W1710758299
LIDH01000735
Gammaproteobacteria
OM182 bacterium BACL3 MAG-120531-bin86 [LIDH]
147
71
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK