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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.16572 (73 seq.)
>W1710782874
LJFJ01000004
Bacillota
Limosilactobacillus fermentum [LJFJ]
843911
843822
-
Ser
GCT
[ENA]
¡û
>W1710801569
LJWZ01000013
Bacillota
Limosilactobacillus fermentum [LJWZ]
1440
1529
+
Ser
GCT
[ENA]
¡û
>W1711487604
MKGE01000001
Bacillota
Limosilactobacillus fermentum [MKGE]
12138
12049
-
Ser
GCT
[ENA]
¡û
>W1712106917
NIWV01000011
Bacillota
Limosilactobacillus fermentum [NIWV]
1695
1784
+
Ser
GCT
[ENA]
¡û
>C171088315
CP019030
Bacillota
Limosilactobacillus fermentum SNUV175 [CP019030]
328055
327966
-
Ser
GCT
-
¡û
>C171115638
CP021104
Bacillota
Limosilactobacillus fermentum FTDC 8312 [CP021104]
660333
660422
+
Ser
GCT
-
¡û
>C171123281
CP021790
Bacillota
Limosilactobacillus fermentum LAC FRN-92 [CP021790]
835667
835756
+
Ser
GCT
-
¡û
>WENV180441305
OBWW01000163
[OBWW] human gut metagenome; faeces
5689
5600
-
Ser
GCT
[ENA]
¢þ
>W141092490
AVAB01000001
Bacillota
Limosilactobacillus fermentum MTCC 8711 [AVAB]
657832
657921
+
Ser
GCT
[ENA]
¡û
>W141094625
AVCT01000026
Bacillota
Limosilactobacillus fermentum 3872 [AVCT]
2022
2111
+
Ser
GCT
[ENA]
¡û
>W141148199
AWXS01000060
Bacillota
Limosilactobacillus fermentum Lf1 [AWXS]
4563
4652
+
Ser
GCT
[ENA]
¡û
>WENV182028878
OHCP01021432
[OHCP] human gut metagenome; feces
831
741
-
Ser
GCT
[ENA]
¢þ
>WENV182404223
OIEU01006445
[OIEU] human gut metagenome; human gut
38
127
+
Ser
GCT
[ENA]
¢þ
>WENV182617422
OJKD01007016
[OJKD] metagenome; faeces
230
143
-
Ser
GCT
[ENA]
¢þ
>C08006060
AP008937
Bacillota
Limosilactobacillus fermentum IFO 3956 [AP008937]
657567
657656
+
Ser
GCT
[Ensembl]
¡û
>WENV183161882
OLOV01024982
[OLOV] human gut metagenome; faeces
606
696
+
Ser
GCT
[ENA]
¢þ
>WENV183182314
OLPK01000148
[OLPK] human gut metagenome; faeces
240
329
+
Ser
GCT
[ENA]
¢þ
>WENV183217265
OLQI01000111
[OLQI] human gut metagenome; faeces
78535
78624
+
Ser
GCT
[ENA]
¢þ
>WENV183555366
OOBN01002242
[OOBN] human gut metagenome; human gut
12010
11921
-
Ser
GCT
[ENA]
¢þ
>WENV183606358
OODN01002827
[OODN] human gut metagenome; human gut
727
816
+
Ser
GCT
[ENA]
¢þ
>WENV183649116
OQVS01110091
[OQVS] human gut metagenome; human gut
95
5
-
Ser
GCT
[ENA]
¢þ
>C181004033
AP017973
Bacillota
Limosilactobacillus fermentum MTCC 25067 [AP017973]
626829
626918
+
Ser
GCT
-
¡û
>C181054764
CP021964
Bacillota
Limosilactobacillus fermentum CBA7106 [CP021964]
597394
597483
+
Ser
GCT
-
¡û
>C181196702
CP031195
Bacillota
Limosilactobacillus fermentum LDTM 7301 [CP031195]
110215
110304
+
Ser
GCT
-
¡û
>C181226937
LT906621
Bacillota
Limosilactobacillus fermentum IMDO 130101 [LT906621]
638424
638513
+
Ser
GCT
-
¡û
>C191012495
CP016803
Bacillota
Limosilactobacillus fermentum SK152 [CP016803]
554889
554800
-
Ser
GCT
-
¡û
>C191121363
CP034193
Bacillota
Limosilactobacillus fermentum YL-11 [CP034193]
602160
602249
+
Ser
GCT
-
¡û
>C191134234
CP035054
Bacillota
Limosilactobacillus fermentum SRCM103285 [CP035054]
1478739
1478650
-
Ser
GCT
-
¡û
>W09122648
ACGI01000081
Bacillota
Limosilactobacillus fermentum ATCC 14931 [ACGI]
1149
1060
-
Ser
GCT
[ENA]
¡û
>W09128035
ACLL01000013
Bacillota
Limosilactobacillus antri DSM 16041 [ACLL]
18940
19029
+
Ser
GCT
[ENA]
¡û
>W1910181302
BJLV01000134
Bacillota
Limosilactobacillus fermentum NBRC 3959 [BJLV]
407
496
+
Ser
GCT
[ENA]
¡û
>W1911533718
OKQY01000092
Bacillota
Limosilactobacillus fermentum CECT 9269 [OKQY]
1467
1556
+
Ser
GCT
[ENA]
¡û
>W1810059003
PDKX01000097
Bacillota
Limosilactobacillus fermentum NCDC 400 [PDKX]
1732
1643
-
Ser
GCT
[ENA]
¡û
>W1810090645
PGGI01000010
Bacillota
Limosilactobacillus fermentum 279 [PGGI]
1468
1557
+
Ser
GCT
[ENA]
¡û
>W1810190860
PKKD01000077
Bacillota
Limosilactobacillus fermentum UMB0187 [PKKD]
1428
1517
+
Ser
GCT
[ENA]
¡û
>W1810223798
POTQ01000027
Bacillota
Limosilactobacillus fermentum CRL1446 [POTQ]
36889
36800
-
Ser
GCT
[ENA]
¡û
>W1810297075
PTLW01000044
Bacillota
Limosilactobacillus fermentum MD IIE-4657 [PTLW]
1516
1605
+
Ser
GCT
[ENA]
¡û
>W1810595160
QGDR01000002
Bacillota
Limosilactobacillus mucosae AGR63 [QGDR]
91920
91831
-
Ser
GCT
[ENA]
¡û
>W1810695503
QLNN01000028
Bacillota
Limosilactobacillus fermentum LF2 [QLNN]
1430
1519
+
Ser
GCT
[ENA]
¡û
>W1810705614
QMJL01000021
Bacillota
Limosilactobacillus fermentum KMB_612 [QMJL]
33310
33221
-
Ser
GCT
[ENA]
¡û
>W1810814667
QSAL01000016
Bacillota
Limosilactobacillus fermentum AF11-4-H [QSAL]
1449
1538
+
Ser
GCT
[ENA]
¡û
>C151075317
CP011013
Bacillota
Limosilactobacillus mucosae LM1 [CP011013]
1734931
1734842
-
Ser
GCT
[Ensembl]
¡û
>C151084257
CP011536
Bacillota
Limosilactobacillus fermentum 3872 [CP011536]
650827
650916
+
Ser
GCT
-
¡û
>W10103406
ACQG01000069
Bacillota
Limosilactobacillus fermentum 28-3-CHN [ACQG]
1341
1430
+
Ser
GCT
[ENA]
¡û
>W1510021797
BCAH01000024
Bacillota
Limosilactobacillus gorillae KZ01 [BCAH]
1356
1445
+
Ser
GCT
[ENA]
¡û
>C10108360
CP002033
Bacillota
Limosilactobacillus fermentum CECT 5716 [CP002033]
658124
658213
+
Ser
GCT
[Ensembl]
¡û
>W11103562
ACQG01000069
Bacillota
Limosilactobacillus fermentum 28-3-CHN [ACQG]
1341
1430
+
Ser
GCT
[ENA]
¡û
>W1510650154
CVQW01000002
Bacillota
Limosilactobacillus mucosae LM1 Marseille [CVQW]
860
949
+
Ser
GCT
[ENA]
¡û
>W1511352324
JROC01000011
Bacillota
Limosilactobacillus mucosae CRL573 [JROC]
1425
1514
+
Ser
GCT
[ENA]
¡û
>W1511352372
JROC01000029
Bacillota
Limosilactobacillus mucosae CRL573 [JROC]
1747
1836
+
Ser
GCT
[ENA]
¡û
>W1511388692
JSWI01000006
Bacillota
Limosilactobacillus mucosae DPC 6426 [JSWI]
55771
55682
-
Ser
GCT
[ENA]
¡û
>W1511443788
JUTH01000136
Bacillota
Limosilactobacillus fermentum 779_LFER [JUTH]
3576
3665
+
Ser
GCT
[ENA]
¡û
>W11139759
AEKL01000027
Bacillota
Limosilactobacillus oris PB013-T2-3 [AEKL]
46255
46344
+
Ser
GCT
[ENA]
¡û
>W1511567848
LAIK01000007
Bacillota
Limosilactobacillus fermentum LfQi6 [LAIK]
156470
156381
-
Ser
GCT
[ENA]
¡û
>W1511580736
LARO01000089
Bacillota
Lactobacillus sp. N54.MGS-719 [LARO]
352
263
-
Ser
GCT
[ENA]
¡û
>W1511589473
LBDG01000003
Bacillota
Limosilactobacillus fermentum 39 [LBDG]
6466
6555
+
Ser
GCT
[ENA]
¡û
>W1511589533
LBDH01000013
Bacillota
Limosilactobacillus fermentum 90 TC-4 [LBDH]
62745
62656
-
Ser
GCT
[ENA]
¡û
>W11173036
AFTL01000015
Bacillota
Limosilactobacillus oris F0423 [AFTL]
33159
33070
-
Ser
GCT
[ENA]
¡û
>C161077681
CP014787
Bacillota
Limosilactobacillus oris J-1 [CP014787]
1000018
1000107
+
Ser
GCT
-
¡û
>C161077738
CP014787
Bacillota
Limosilactobacillus oris J-1 [CP014787]
1254221
1254132
-
Ser
GCT
-
¡û
>W121033328
AHIT01000015
Bacillota
Limosilactobacillus mucosae LM1 [AHIT]
647
736
+
Ser
GCT
[ENA]
¡û
>W1610034037
AZDK01000010
Bacillota
Limosilactobacillus antri DSM 16041 [AZDK]
66498
66409
-
Ser
GCT
[ENA]
¡û
>W1610037646
AZGE01000030
Bacillota
Limosilactobacillus oris DSM 4864 [AZGE]
12099
12188
+
Ser
GCT
[ENA]
¡û
>W1610527943
JQAU01000042
Bacillota
Limosilactobacillus fermentum [JQAU]
1431
1520
+
Ser
GCT
[ENA]
¡û
>W1610549113
JXDF01000020
Bacillota
Apilactobacillus kunkeei [JXDF]
288
199
-
Ser
GCT
[ENA]
¡û
>W1610647382
LJFJ01000004
Bacillota
Limosilactobacillus fermentum [LJFJ]
843911
843822
-
Ser
GCT
[ENA]
¡û
>W1610665526
LJWZ01000013
Bacillota
Limosilactobacillus fermentum [LJWZ]
1440
1529
+
Ser
GCT
[ENA]
¡û
>W1710031164
AZDK01000010
Bacillota
Limosilactobacillus antri DSM 16041 [AZDK]
66498
66409
-
Ser
GCT
[ENA]
¡û
>W1710034685
AZGE01000030
Bacillota
Limosilactobacillus oris DSM 4864 [AZGE]
12099
12188
+
Ser
GCT
[ENA]
¡û
>W1710523876
FNIH01000007
Bacillota
Limosilactobacillus mucosae [FNIH]
892
981
+
Ser
GCT
[ENA]
¡û
>W1710566939
FOSI01000007
Bacillota
Limosilactobacillus mucosae [FOSI]
813
902
+
Ser
GCT
[ENA]
¡û
>W1710629574
JQAU01000042
Bacillota
Limosilactobacillus fermentum [JQAU]
1431
1520
+
Ser
GCT
[ENA]
¡û
>W1710652687
JXDF01000020
Bacillota
Apilactobacillus kunkeei [JXDF]
288
199
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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