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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.165941 (47 seq.)
>W1711404293
MFYH01000023
Unclassified
Candidatus Peribacteria bacterium RIFOXYA1_FULL_56_14 [MFYH]
30770
30694
-
Gly
GCC
[ENA]
¡û
>W1711404350
MFYI01000016
Unclassified
Candidatus Peribacteria bacterium RIFOXYA2_FULL_55_28 [MFYI]
58083
58159
+
Gly
GCC
[ENA]
¡û
>W1711404379
MFYJ01000007
Unclassified
Candidatus Peribacteria bacterium RIFOXYB1_FULL_54_35 [MFYJ]
73606
73530
-
Gly
GCC
[ENA]
¡û
>W1711404406
MFYK01000006
Unclassified
Candidatus Peribacteria bacterium RIFOXYB1_FULL_57_12 [MFYK]
16906
16982
+
Gly
GCC
[ENA]
¡û
>W1711404464
MFYL01000013
Unclassified
Candidatus Peribacteria bacterium RIFOXYB2_FULL_54_17 [MFYL]
312192
312268
+
Gly
GCC
[ENA]
¡û
>W1711404490
MFYM01000002
Unclassified
Candidatus Peribacteria bacterium RIFOXYC1_FULL_54_13 [MFYM]
84873
84949
+
Gly
GCC
[ENA]
¡û
>W1711404574
MFYO01000006
Unclassified
Candidatus Peribacteria bacterium RIFOXYC2_FULL_55_14 [MFYO]
54166
54242
+
Gly
GCC
[ENA]
¡û
>W1711404612
MFYP01000007
Unclassified
Candidatus Peribacteria bacterium RIFOXYC2_FULL_58_10 [MFYP]
8949
9025
+
Gly
GCC
[ENA]
¡û
>W1711404671
MFYQ01000025
Unclassified
Candidatus Peribacteria bacterium RIFOXYD1_FULL_54_13 [MFYQ]
53443
53519
+
Gly
GCC
[ENA]
¡û
>W1711404705
MFYR01000006
Unclassified
Candidatus Peribacteria bacterium RIFOXYD2_FULL_58_15 [MFYR]
33256
33180
-
Gly
GCC
[ENA]
¡û
>W1711582991
MNWP01000012
Unclassified
Candidatus Peregrinibacteria bacterium CG1_02_54_53 [MNWP]
6487
6563
+
Gly
GCC
[ENA]
¡û
>WENV180058987
MPLX02084441
[MPLX] marine metagenome; 120 m water sample filtered on 0.2 um supor filter
436
360
-
Gly
GCC
[ENA]
¡û
>WENV180079099
MPMB02142358
[MPMB] marine metagenome; 300 m water sample filtered on 0.2 um supor filter
1056
1132
+
Gly
GCC
[ENA]
¡û
>WENV180270766
OBEQ012202348
[OBEQ] groundwater metagenome; groundwater
1053
1129
+
Gly
GCC
[ENA]
¡û
>WENV180376941
OBOM01162272
[OBOM] marine metagenome; Seawater
168
244
+
Gly
GCC
[ENA]
¡û
>WENV183689174
ORMF011400159
[ORMF] groundwater metagenome; groundwater
372
296
-
Gly
GCC
[ENA]
¡û
>WENV183692694
ORMF011961777
[ORMF] groundwater metagenome; groundwater
2631
2555
-
Gly
GCC
[ENA]
¡û
>WENV170203577
CEPS01067685
[CEPS] marine metagenome genome assembly TARA_038_MES_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
277
201
-
Gly
GCC
[ENA]
¡û
>WENV170209340
CEPV01050168
[CEPV] marine metagenome genome assembly TARA_039_MES_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
678
602
-
Gly
GCC
[ENA]
¡û
>WENV170889392
MDTC01274120
[MDTC] marine metagenome; seawater
1598
1522
-
Gly
GCC
[ENA]
¡û
>W1910716911
MFXO01000005
Unclassified
Candidatus Peribacteria bacterium RIFCSPHIGHO2_01_FULL_49_38 [MFXO]
75528
75452
-
Gly
GCC
[ENA]
¡û
>W1910716961
MFXP01000006
Unclassified
Candidatus Peribacteria bacterium RIFCSPHIGHO2_01_FULL_51_35 [MFXP]
61409
61333
-
Gly
GCC
[ENA]
¡û
>W1910717029
MFXR01000008
Unclassified
Candidatus Peribacteria bacterium RIFCSPHIGHO2_01_FULL_54_22 [MFXR]
21466
21390
-
Gly
GCC
[ENA]
¡û
>W1910717138
MFXT01000026
Unclassified
Candidatus Peribacteria bacterium RIFCSPHIGHO2_02_FULL_49_16 [MFXT]
91705
91781
+
Gly
GCC
[ENA]
¡û
>W1910717282
MFXX01000023
Unclassified
Candidatus Peribacteria bacterium RIFCSPHIGHO2_02_FULL_55_24 [MFXX]
14136
14212
+
Gly
GCC
[ENA]
¡û
>W1910717319
MFXY01000040
Unclassified
Candidatus Peribacteria bacterium RIFCSPHIGHO2_12_FULL_54_10 [MFXY]
20498
20574
+
Gly
GCC
[ENA]
¡û
>W1910717462
MFYC01000035
Unclassified
Candidatus Peribacteria bacterium RIFCSPLOWO2_01_FULL_54_110 [MFYC]
32509
32585
+
Gly
GCC
[ENA]
¡û
>W1910717530
MFYE01000019
Unclassified
Candidatus Peribacteria bacterium RIFCSPLOWO2_02_FULL_55_36 [MFYE]
9881
9957
+
Gly
GCC
[ENA]
¡û
>W1910717606
MFYG01000013
Unclassified
Candidatus Peribacteria bacterium RIFCSPLOWO2_12_FULL_55_15 [MFYG]
44633
44709
+
Gly
GCC
[ENA]
¡û
>SRA1025805
SRR035085.86744
454 Sequencing (SRP001806)
421
345
-
Gly
GCC
[SRA]
>W2010850337
MFXO01000005
Unclassified
Candidatus Peribacteria bacterium RIFCSPHIGHO2_01_FULL_49_38 [MFXO]
75528
75452
-
Gly
GCC
[ENA]
¡û
>W2010850387
MFXP01000006
Unclassified
Candidatus Peribacteria bacterium RIFCSPHIGHO2_01_FULL_51_35 [MFXP]
61409
61333
-
Gly
GCC
[ENA]
¡û
>W2010850455
MFXR01000008
Unclassified
Candidatus Peribacteria bacterium RIFCSPHIGHO2_01_FULL_54_22 [MFXR]
21466
21390
-
Gly
GCC
[ENA]
¡û
>W2010850564
MFXT01000026
Unclassified
Candidatus Peribacteria bacterium RIFCSPHIGHO2_02_FULL_49_16 [MFXT]
91705
91781
+
Gly
GCC
[ENA]
¡û
>W2010850708
MFXX01000023
Unclassified
Candidatus Peribacteria bacterium RIFCSPHIGHO2_02_FULL_55_24 [MFXX]
14136
14212
+
Gly
GCC
[ENA]
¡û
>W2010850745
MFXY01000040
Unclassified
Candidatus Peribacteria bacterium RIFCSPHIGHO2_12_FULL_54_10 [MFXY]
20498
20574
+
Gly
GCC
[ENA]
¡û
>W2010850888
MFYC01000035
Unclassified
Candidatus Peribacteria bacterium RIFCSPLOWO2_01_FULL_54_110 [MFYC]
32509
32585
+
Gly
GCC
[ENA]
¡û
>W2010850956
MFYE01000019
Unclassified
Candidatus Peribacteria bacterium RIFCSPLOWO2_02_FULL_55_36 [MFYE]
9881
9957
+
Gly
GCC
[ENA]
¡û
>W2010851032
MFYG01000013
Unclassified
Candidatus Peribacteria bacterium RIFCSPLOWO2_12_FULL_55_15 [MFYG]
44633
44709
+
Gly
GCC
[ENA]
¡û
>W1511618885
LCRQ01000001
Unclassified
Candidatus Peribacteria bacterium GW2011_GWB1_54_5 GW2011_GWB1_54_5 [LCRQ]
4317
4393
+
Gly
GCC
[ENA]
¡û
>W1511619028
LCRV01000010
Unclassified
Candidatus Peregrinibacteria bacterium GW2011_GWA2_54_9 GW2011_GWA2_54_9 [LCRV]
77
1
-
Gly
GCC
[ENA]
¡û
>C161050439
CP013062
Unclassified
Candidatus Peribacter riflensis [CP013062]
673717
673793
+
Gly
GCC
-
¡û
>C161050483
CP013063
Unclassified
Candidatus Peribacter riflensis [CP013063]
673872
673948
+
Gly
GCC
-
¡û
>C161050527
CP013064
Unclassified
Candidatus Peribacter riflensis [CP013064]
673803
673879
+
Gly
GCC
-
¡û
>C161050571
CP013065
Unclassified
Candidatus Peribacter riflensis [CP013065]
673596
673672
+
Gly
GCC
-
¡û
>C161050615
CP013066
Unclassified
Candidatus Peribacter riflensis [CP013066]
673871
673947
+
Gly
GCC
-
¡û
>WENV068923
AACY023744506
Marine microbial communities from Global Ocean Sampling (GOS)
621
545
-
Gly
GCC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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