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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.165988 (44 seq.)
>W1711423027
MICF01000005
Campylobacterota
Sulfurimonas sp. RIFOXYD12_FULL_33_39 [MICF]
17645
17569
-
Arg
GCG
[ENA]
¡û
>W1711423076
MICH01000010
Campylobacterota
Sulfurimonas sp. RIFOXYD2_FULL_34_21 [MICH]
363956
364032
+
Arg
GCG
[ENA]
¡û
>W1711582145
MNUZ01000124
Campylobacterota
Helicobacteraceae bacterium CG1_02_36_14 [MNUZ]
8361
8285
-
Arg
GCG
[ENA]
¡û
>W1711584548
MNYP01000165
Campylobacterota
Helicobacteraceae bacterium CG2_30_36_10 [MNYP]
8088
8164
+
Arg
GCG
[ENA]
¡û
>C025454
CP000153
Campylobacterota
Sulfurimonas denitrificans DSM 1251 [CP000153]
1764099
1764023
-
Arg
GCG
[Ensembl]
¡û
>WENV180242299
OBDI01170825
[OBDI] metagenome; diffuse fluid
135
59
-
Arg
GCG
[ENA]
¡û
>WENV180345894
OBLN01010351
[OBLN] sediment metagenome; sediment
610
686
+
Arg
GCG
[ENA]
¡û
>WENV180583903
OCNB01269620
[OCNB] metagenome; diffuse fluid
120
44
-
Arg
GCG
[ENA]
¡û
>WENV180634333
OCRB01002308
[OCRB] metagenome; diffuse fluid
204
128
-
Arg
GCG
[ENA]
¡û
>W141083599
AUPZ01000004
Campylobacterota
Sulfurimonas hongkongensis AST-10 [AUPZ]
70991
71067
+
Arg
GCG
[ENA]
¡û
>WENV181207661
OFAZ01010621
[OFAZ] metagenome; hydrothermal vent
575
651
+
Arg
GCG
[ENA]
¡û
>WENV181209827
OFBF01003087
[OFBF] metagenome; hydrothermal vent
289
213
-
Arg
GCG
[ENA]
¡û
>WENV181210798
OFBI01002789
[OFBI] metagenome; hydrothermal vent
125
201
+
Arg
GCG
[ENA]
¡û
>WENV181216294
OFCB01017715
[OFCB] metagenome; hydrothermal vent
217
141
-
Arg
GCG
[ENA]
¡û
>WENV181226597
OFDL01011888
[OFDL] metagenome; hydrothermal vent
327
251
-
Arg
GCG
[ENA]
¡û
>WENV181228278
OFDO01007399
[OFDO] metagenome; hydrothermal vent
156
232
+
Arg
GCG
[ENA]
¡û
>WENV181293792
OFHG01025181
[OFHG] soil metagenome; Clay
947
1023
+
Arg
GCG
[ENA]
¡û
>WENV170575649
FPHH01000068
[FPHH] hydrothermal vent metagenome genome assembly, contig: NODE_101.; water
390
314
-
Arg
GCG
[ENA]
¡û
>WENV170575656
FPHH01000125
[FPHH] hydrothermal vent metagenome genome assembly, contig: NODE_101.; water
6120
6196
+
Arg
GCG
[ENA]
¡û
>WENV170575659
FPHH01000161
[FPHH] hydrothermal vent metagenome genome assembly, contig: NODE_101.; water
16133
16057
-
Arg
GCG
[ENA]
¡û
>WENV170598898
FUWD010054062
[FUWD] metagenome; unknown
165
241
+
Arg
GCG
[ENA]
¡û
>WENV170602709
FUWD010256001
[FUWD] metagenome; unknown
86
10
-
Arg
GCG
[ENA]
¡û
>WENV170640688
JFJP01023999
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
102857
102933
+
Arg
GCG
[ENA]
¡û
>WENV170641921
JFJP01038167
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
13
89
+
Arg
GCG
[ENA]
¡û
>WENV170658532
JTFP01135395
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
609
533
-
Arg
GCG
[ENA]
¡û
>WENV170695315
LGVE01075219
[LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
535
459
-
Arg
GCG
[ENA]
¡û
>W09103212
AAJA01000001
Campylobacterota
Sulfurimonas denitrificans ATCC 33889 [AAJA]
1081508
1081584
+
Arg
GCG
[ENA]
¡û
>W09111604
ABXD01000012
Campylobacterota
Sulfurimonas gotlandica GD 1 [ABXD]
400182
400258
+
Arg
GCG
[ENA]
¡û
>W1910744643
MICA01000143
Campylobacterota
Sulfurimonas sp. RIFCSPLOWO2_12_FULL_34_6 [MICA]
454
530
+
Arg
GCG
[ENA]
¡û
>W2010878075
MICA01000143
Campylobacterota
Sulfurimonas sp. RIFCSPLOWO2_12_FULL_34_6 [MICA]
454
530
+
Arg
GCG
[ENA]
¡û
>W2011751860
SZPX01000006
Campylobacterota
Sulfurimonas sp. SN118 [SZPX]
206774
206698
-
Arg
GCG
[ENA]
¡û
>C201092982
CP041166
Campylobacterota
Sulfurimonas sp. 1-1N [CP041166]
1543141
1543065
-
Arg
GCG
-
¡û
>C211008634
AP023212
Campylobacterota
Hydrogenimonas urashimensis SSM-sur55 [AP023212]
1250768
1250692
-
Arg
GCG
-
¡û
>C211052484
CP041235
Campylobacterota
Sulfurimonas sp. S2-6 [CP041235]
1868672
1868596
-
Arg
GCG
-
¡û
>C211052665
CP041406
Campylobacterota
Sulfurimonas paralvinellae GO25 [CP041406]
1627838
1627762
-
Arg
GCG
-
¡û
>C211065992
CP046072
Campylobacterota
Sulfurimonas sp. H1576 [CP046072]
2189534
2189458
-
Arg
GCG
-
¡û
>C231194028
CP084578
Campylobacterota
Sulfurimonas sp. SWIR-19 [CP084578]
1903625
1903549
-
Arg
GCG
-
¡û
>C241011737
AP027370
Campylobacterota
Hydrogenimonas cancrithermarum ISO32 [AP027370]
1586519
1586595
+
Arg
GCG
-
¡û
>C241040203
CP033720
Campylobacterota
Sulfurimonas sp. CVO [CP033720]
348603
348679
+
Arg
GCG
-
¡û
>C241042972
CP035534
Campylobacterota
Sulfurimonas hydrogeniphila NW10 [CP035534]
419791
419867
+
Arg
GCG
-
¡û
>C11119344
CP002205
Campylobacterota
Sulfurimonas autotrophica DSM 16294 [CP002205]
1730585
1730509
-
Arg
GCG
[Ensembl]
¡û
>W121004871
AFRZ01000001
Campylobacterota
Sulfurimonas gotlandica GD1 [AFRZ]
1837904
1837980
+
Arg
GCG
[ENA]
¡û
>WENV069355
AACY023763151
Marine microbial communities from Global Ocean Sampling (GOS)
1072
994
-
Arg
GCG
[ENA]
>WENV069482
AACY023768869
Marine microbial communities from Global Ocean Sampling (GOS)
227
149
-
Arg
GCG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK