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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.166091 (120 seq.)
>W1710853201
LLWK01000033
Bacteroidota
Flavobacterium sp. TAB 87 [LLWK]
119420
119494
+
Met
CAT
[ENA]
¡û
>W1710991041
LPXI01000068
Bacteroidota
Myroides marinus [LPXI]
117144
117068
-
Met
CAT
[ENA]
¡û
>W1710991044
LPXI01000080
Bacteroidota
Myroides marinus [LPXI]
140788
140714
-
Met
CAT
[ENA]
¡û
>W1710991045
LPXI01000080
Bacteroidota
Myroides marinus [LPXI]
140367
140293
-
Met
CAT
[ENA]
¡û
>W1711005717
LQNU01000033
Bacteroidota
Myroides marinus [LQNU]
123959
124035
+
Met
CAT
[ENA]
¡û
>W1711005740
LQNU01000048
Bacteroidota
Myroides marinus [LQNU]
534
460
-
Met
CAT
[ENA]
¡û
>W1711005741
LQNU01000048
Bacteroidota
Myroides marinus [LQNU]
111
37
-
Met
CAT
[ENA]
¡û
>W131087889
AODQ01000005
Bacteroidota
Cesiribacter andamanensis AMV16 [AODQ]
51231
51305
+
Met
CAT
[ENA]
¡û
>W131225401
AUDO01000001
Bacteroidota
Flavobacterium frigidarium DSM 17623 [AUDO]
230266
230340
+
Met
CAT
[ENA]
¡û
>W1711751641
MUNX01000099
Bacteroidota
Flavobacterium sp. A45 [MUNX]
60217
60141
-
Met
CAT
[ENA]
¡û
>W131002821
AGZL01000024
Bacteroidota
Myroides odoratimimus CCUG 12700 [AGZL]
127031
127107
+
Met
CAT
[ENA]
¡û
>W131002823
AGZL01000024
Bacteroidota
Myroides odoratimimus CCUG 12700 [AGZL]
362673
362749
+
Met
CAT
[ENA]
¡û
>W131146324
AQHR01000044
Bacteroidota
Lunatimonas lonarensis AK24 [AQHR]
13713
13789
+
Met
CAT
[ENA]
¡û
>W131176846
ARKJ01000015
Bacteroidota
Flavobacterium rivuli DSM 21788 [ARKJ]
21376
21300
-
Met
CAT
[ENA]
¡û
>W131225362
AUDN01000005
Bacteroidota
Flavobacterium tegetincola DSM 22377 [AUDN]
204730
204806
+
Met
CAT
[ENA]
¡û
>W131229193
AUGP01000017
Bacteroidota
Flavobacterium subsaxonicum DSM 21790 [AUGP]
116554
116478
-
Met
CAT
[ENA]
¡û
>C171016668
CP012388
Bacteroidota
Flavobacterium psychrophilum Z1 [CP012388]
1325035
1325111
+
Met
CAT
-
¡û
>C171063331
CP017479
Bacteroidota
Flavobacterium gilvum EM1308 [CP017479]
4359213
4359289
+
Met
CAT
-
¡û
>W141008179
AGZK01000040
Bacteroidota
Myroides odoratimimus CCUG 3837 [AGZK]
403719
403645
-
Met
CAT
[ENA]
¡û
>W141008181
AGZK01000040
Bacteroidota
Myroides odoratimimus CCUG 3837 [AGZK]
125862
125786
-
Met
CAT
[ENA]
¡û
>WENV180209550
OBAL01003951
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
1281
1356
+
Met
CAT
[ENA]
¢þ
>W141023462
AJXL01000033
Bacteroidota
Flavobacterium sp. ACAM 123 [AJXL]
24369
24293
-
Met
CAT
[ENA]
¡û
>W141093445
AVBI01000016
Bacteroidota
Flavobacterium cauense R2A-7 [AVBI]
184678
184602
-
Met
CAT
[ENA]
¡û
>W141094594
AVCS01000010
Bacteroidota
Flavobacterium enshiense DK69 [AVCS]
7336
7260
-
Met
CAT
[ENA]
¡û
>W141096654
AVFO01000002
Bacteroidota
Flavobacterium saliperosum S13 [AVFO]
17736
17812
+
Met
CAT
[ENA]
¡û
>W141097137
AVGG01000017
Bacteroidota
Flavobacterium limnosediminis JC2902 [AVGG]
11766
11690
-
Met
CAT
[ENA]
¡û
>WENV181842462
OGVT01002306
[OGVT] freshwater metagenome; freshwater
51
125
+
Met
CAT
[ENA]
¢þ
>WENV181857525
OGWO01011014
[OGWO] freshwater metagenome; freshwater
304
230
-
Met
CAT
[ENA]
¢þ
>WENV183621004
OOFT01002280
[OOFT] marine metagenome; sea ice
1469
1395
-
Met
CAT
[ENA]
¢þ
>WENV183729670
PJTR01000008
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
371105
371179
+
Met
CAT
[ENA]
¢þ
>WENV170003026
AGTN01201172
[AGTN] bioreactor metagenome; poplar biomass
75
151
+
Met
CAT
[ENA]
¢þ
>WENV170022797
BCQK01051277
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
2
76
+
Met
CAT
[ENA]
¢þ
>W141400847
JDSI01000018
Bacteroidota
Schleiferia thermophila str. Yellowstone [JDSI]
10174
10248
+
Met
CAT
[ENA]
¡û
>WENV170229618
CEQG01139400
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
61042
61118
+
Met
CAT
[ENA]
¢þ
>WENV170988849
MWVY01015190
[MWVY] soil metagenome; MS7-5 sample; Antarctic (ecotone) soil
99
23
-
Met
CAT
[ENA]
¢þ
>C181047442
CP020918
Bacteroidota
Flavobacterium faecale WV33 [CP020918]
1991545
1991471
-
Met
CAT
-
¡û
>C181063684
CP022382
Bacteroidota
Capnocytophaga canimorsus 7120 [CP022382]
808369
808295
-
Met
CAT
-
¡û
>C181063957
CP022388
Bacteroidota
Capnocytophaga canimorsus H5594 [CP022388]
809940
809866
-
Met
CAT
-
¡û
>C181064000
CP022389
Bacteroidota
Capnocytophaga canimorsus H3936 [CP022389]
780082
780008
-
Met
CAT
-
¡û
>C181168500
CP028811
Bacteroidota
Flavobacterium magnum HYN0048 [CP028811]
3435085
3435161
+
Met
CAT
-
¡û
>C181175882
CP029186
Bacteroidota
Flavobacterium album HYN0059 [CP029186]
138191
138265
+
Met
CAT
-
¡û
>C181175948
CP029187
Bacteroidota
Flavobacterium pallidum HYN0049 [CP029187]
3522233
3522307
+
Met
CAT
-
¡û
>C191093566
CP032681
Bacteroidota
Capnocytophaga canimorsus RBWH [CP032681]
1167426
1167352
-
Met
CAT
-
¡û
>C191153038
CP037427
Bacteroidota
Myroides odoratimimus G13 [CP037427]
2229427
2229353
-
Met
CAT
-
¡û
>C191153040
CP037427
Bacteroidota
Myroides odoratimimus G13 [CP037427]
2061318
2061244
-
Met
CAT
-
¡û
>C191212999
LR134503
Bacteroidota
Kaistella jeonii NCTC13459 [LR134503]
1560278
1560204
-
Met
CAT
-
¡û
>C191213500
LR134513
Bacteroidota
Capnocytophaga canimorsus NCTC11921 [LR134513]
828943
828869
-
Met
CAT
-
¡û
>W141727208
JNCP01000057
Bacteroidota
Flavobacterium gilvum EM1308 [JNCP]
2206
2130
-
Met
CAT
[ENA]
¡û
>W1910129609
BHZF01000001
Bacteroidota
Schleiferia thermophila JCM 30197 [BHZF]
704823
704749
-
Met
CAT
[ENA]
¡û
>W1910577940
JUIW01000001
Bacteroidota
Flavobacterium beibuense RSKm HC5 [JUIW]
325596
325670
+
Met
CAT
[ENA]
¡û
>W1911139376
NOXV01000296
Bacteroidota
Flavobacterium cyanobacteriorum TH021 [NOXV]
6075
6149
+
Met
CAT
[ENA]
¡û
>W1911243287
NSGJ01000058
Bacteroidota
Myroides sp. N17-2 [NSGJ]
1316
1242
-
Met
CAT
[ENA]
¡û
>W1810121179
PHUE01000001
Bacteroidota
Flavobacterium sp. 5 [PHUE]
3259160
3259086
-
Met
CAT
[ENA]
¡û
>W1810156523
PJBJ01000024
Bacteroidota
Flavobacterium sp. ALD4 [PJBJ]
2193
2119
-
Met
CAT
[ENA]
¡û
>W1810533264
QCZH01000026
Bacteroidota
Flavobacterium laiguense LB2P30 [QCZH]
51451
51525
+
Met
CAT
[ENA]
¡û
>W1810533291
QCZI01000007
Bacteroidota
Flavobacterium psychrotolerans RB1R5 [QCZI]
138267
138341
+
Met
CAT
[ENA]
¡û
>W1810577012
QENX01000001
Bacteroidota
Flavobacterium sp. 103 [QENX]
3013381
3013307
-
Met
CAT
[ENA]
¡û
>W1810759828
QPJS01000001
Bacteroidota
Schleiferia thermophila DSM 21410 [QPJS]
482606
482680
+
Met
CAT
[ENA]
¡û
>W1810762866
QQAR01000013
Bacteroidota
Flavobacterium sp. AG291 [QQAR]
19733
19659
-
Met
CAT
[ENA]
¡û
>W1810885470
QUNI01000013
Bacteroidota
Flavobacterium aquicola DSM 100880 [QUNI]
18790
18716
-
Met
CAT
[ENA]
¡û
>C151066973
CP010327
Bacteroidota
Myroides sp. A21 [CP010327]
2435252
2435178
-
Met
CAT
[Ensembl]
¡û
>C151066975
CP010327
Bacteroidota
Myroides sp. A21 [CP010327]
2209829
2209753
-
Met
CAT
[Ensembl]
¡û
>C151072929
CP010817
Bacteroidota
Myroides profundi D25 [CP010817]
1091036
1090960
-
Met
CAT
[Ensembl]
¡û
>C151072931
CP010817
Bacteroidota
Myroides profundi D25 [CP010817]
923323
923247
-
Met
CAT
[Ensembl]
¡û
>W1510076207
CDOE01000077
Bacteroidota
Capnocytophaga canimorsus Cc12 [CDOE]
72858
72782
-
Met
CAT
[ENA]
¡û
>W1510076392
CDOJ01000098
Bacteroidota
Capnocytophaga canimorsus Cc2 [CDOJ]
19338
19264
-
Met
CAT
[ENA]
¡û
>W1510076409
CDOK01000064
Bacteroidota
Capnocytophaga canimorsus Cc11 [CDOK]
6251
6177
-
Met
CAT
[ENA]
¡û
>C11104998
CP002113
Bacteroidota
Capnocytophaga canimorsus Cc5 [CP002113]
1734817
1734743
-
Met
CAT
[Ensembl]
¡û
>W1511390880
JSYL01000002
Bacteroidota
Kaistella jeonii DSM 17048 [JSYL]
111303
111227
-
Met
CAT
[ENA]
¡û
>W1511481071
JWJO01000022
Bacteroidota
Myroides marinus L41 [JWJO]
1255
1179
-
Met
CAT
[ENA]
¡û
>W1511481103
JWJO01000070
Bacteroidota
Myroides marinus L41 [JWJO]
525
451
-
Met
CAT
[ENA]
¡û
>W1511481104
JWJO01000070
Bacteroidota
Myroides marinus L41 [JWJO]
102
28
-
Met
CAT
[ENA]
¡û
>C161003275
CP004371
Bacteroidota
Flammeovirgaceae bacterium 311 [CP004371]
376926
376850
-
Met
CAT
[Ensembl]
¡û
>C161042824
CP012586
Bacteroidota
Flavobacterium psychrophilum Z2 [CP012586]
1325009
1325085
+
Met
CAT
-
¡û
>C161059448
CP013690
Bacteroidota
Myroides odoratimimus PR63039 [CP013690]
2432966
2432892
-
Met
CAT
[Ensembl]
¡û
>C161059450
CP013690
Bacteroidota
Myroides odoratimimus PR63039 [CP013690]
2154546
2154470
-
Met
CAT
[Ensembl]
¡û
>W121009068
AGEC01000001
Bacteroidota
Myroides odoratimimus CCUG 10230 [AGEC]
128155
128231
+
Met
CAT
[ENA]
¡û
>W121009070
AGEC01000002
Bacteroidota
Myroides odoratimimus CCUG 10230 [AGEC]
242303
242379
+
Met
CAT
[ENA]
¡û
>W121009167
AGED01000013
Bacteroidota
Myroides odoratimimus CCUG 12901 [AGED]
28227
28151
-
Met
CAT
[ENA]
¡û
>W121009168
AGED01000018
Bacteroidota
Myroides odoratimimus CCUG 12901 [AGED]
13722
13648
-
Met
CAT
[ENA]
¡û
>W121009232
AGEE01000008
Bacteroidota
Myroides odoratimimus CIP 101113 [AGEE]
118563
118487
-
Met
CAT
[ENA]
¡û
>W121009236
AGEE01000009
Bacteroidota
Myroides odoratimimus CIP 101113 [AGEE]
87793
87719
-
Met
CAT
[ENA]
¡û
>W121034181
AHKF01000004
Bacteroidota
Flavobacterium frigoris PS1 [AHKF]
119022
119096
+
Met
CAT
[ENA]
¡û
>W121062947
AJJU01000034
Bacteroidota
Imtechella halotolerans K1 [AJJU]
47259
47335
+
Met
CAT
[ENA]
¡û
>W1610061494
BCMQ01000006
Bacteroidota
Myroides odoratimimus [BCMQ]
132349
132425
+
Met
CAT
[ENA]
¡û
>W1610061525
BCMQ01000027
Bacteroidota
Myroides odoratimimus [BCMQ]
9651
9575
-
Met
CAT
[ENA]
¡û
>W1610534999
JRLU01000015
Bacteroidota
Flavobacterium cauense R2A-7 [JRLU]
7152
7076
-
Met
CAT
[ENA]
¡û
>W1610535098
JRLX01000020
Bacteroidota
Flavobacterium rivuli WB 3.3-2 = DSM 21788 [JRLX]
68856
68932
+
Met
CAT
[ENA]
¡û
>W1610535193
JRLZ01000017
Bacteroidota
Flavobacterium enshiense DK69 [JRLZ]
7338
7262
-
Met
CAT
[ENA]
¡û
>W1610716325
LLWK01000033
Bacteroidota
Flavobacterium sp. TAB 87 [LLWK]
119420
119494
+
Met
CAT
[ENA]
¡û
>W1610845713
LPXI01000068
Bacteroidota
Myroides marinus [LPXI]
117144
117068
-
Met
CAT
[ENA]
¡û
>W1610845716
LPXI01000080
Bacteroidota
Myroides marinus [LPXI]
140788
140714
-
Met
CAT
[ENA]
¡û
>W1610845717
LPXI01000080
Bacteroidota
Myroides marinus [LPXI]
140367
140293
-
Met
CAT
[ENA]
¡û
>W1610856367
LQNU01000033
Bacteroidota
Myroides marinus [LQNU]
123959
124035
+
Met
CAT
[ENA]
¡û
>W1610856390
LQNU01000048
Bacteroidota
Myroides marinus [LQNU]
534
460
-
Met
CAT
[ENA]
¡û
>W1610856391
LQNU01000048
Bacteroidota
Myroides marinus [LQNU]
111
37
-
Met
CAT
[ENA]
¡û
>W1710059159
BCMQ01000006
Bacteroidota
Myroides odoratimimus [BCMQ]
132349
132425
+
Met
CAT
[ENA]
¡û
>W1710059190
BCMQ01000027
Bacteroidota
Myroides odoratimimus [BCMQ]
9651
9575
-
Met
CAT
[ENA]
¡û
>W1710505759
FMTY01000001
Bacteroidota
Flavobacterium saliperosum [FMTY]
114849
114925
+
Met
CAT
[ENA]
¡û
>W1710507365
FMVF01000008
Bacteroidota
Flavobacterium caeni [FMVF]
65448
65372
-
Met
CAT
[ENA]
¡û
>W1710528037
FNMV01000011
Bacteroidota
Flavobacterium degerlachei [FNMV]
82718
82794
+
Met
CAT
[ENA]
¡û
>W1710533491
FNRD01000013
Bacteroidota
Flavobacterium gillisiae [FNRD]
13639
13563
-
Met
CAT
[ENA]
¡û
>W1710541902
FNYS01000011
Bacteroidota
Myroides marinus [FNYS]
18916
18842
-
Met
CAT
[ENA]
¡û
>W1710541903
FNYS01000011
Bacteroidota
Myroides marinus [FNYS]
18492
18418
-
Met
CAT
[ENA]
¡û
>W1710541905
FNYS01000012
Bacteroidota
Myroides marinus [FNYS]
8751
8675
-
Met
CAT
[ENA]
¡û
>W1710551260
FOFY01000003
Bacteroidota
Myroides profundi [FOFY]
8409
8485
+
Met
CAT
[ENA]
¡û
>W1710551262
FOFY01000003
Bacteroidota
Myroides profundi [FOFY]
175515
175591
+
Met
CAT
[ENA]
¡û
>W1710551338
FOFZ01000007
Bacteroidota
Flavobacterium frigoris [FOFZ]
77138
77062
-
Met
CAT
[ENA]
¡û
>W1710557441
FOLA01000003
Bacteroidota
Kaistella jeonii [FOLA]
275299
275375
+
Met
CAT
[ENA]
¡û
>W1710570721
FOVI01000009
Bacteroidota
Paenimyroides ummariense [FOVI]
6979
6903
-
Met
CAT
[ENA]
¡û
>W1710574133
FOYA01000014
Bacteroidota
Flavobacterium akiainvivens [FOYA]
8095
8019
-
Met
CAT
[ENA]
¡û
>W1710585069
FQWB01000004
Bacteroidota
Flavobacterium fluvii [FQWB]
67357
67433
+
Met
CAT
[ENA]
¡û
>W1710585186
FQWE01000001
Bacteroidota
Flavobacterium segetis [FQWE]
420887
420963
+
Met
CAT
[ENA]
¡û
>W1710585228
FQWF01000002
Bacteroidota
Flavobacterium micromati [FQWF]
170996
171070
+
Met
CAT
[ENA]
¡û
>W1710591217
FRBO01000006
Bacteroidota
Myroides odoratimimus xuanwuensis [FRBO]
121185
121109
-
Met
CAT
[ENA]
¡û
>W1710591245
FRBO01000013
Bacteroidota
Myroides odoratimimus xuanwuensis [FRBO]
127298
127372
+
Met
CAT
[ENA]
¡û
>W1710598909
FTOI01000002
Bacteroidota
Kaistella chaponensis chaponense [FTOI]
261054
261128
+
Met
CAT
[ENA]
¡û
>W1710637235
JRLU01000015
Bacteroidota
Flavobacterium cauense R2A-7 [JRLU]
7152
7076
-
Met
CAT
[ENA]
¡û
>W1710637334
JRLX01000020
Bacteroidota
Flavobacterium rivuli WB 3.3-2 = DSM 21788 [JRLX]
68856
68932
+
Met
CAT
[ENA]
¡û
>W1710637429
JRLZ01000017
Bacteroidota
Flavobacterium enshiense DK69 [JRLZ]
7338
7262
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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