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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.166173 (17 seq.)
>W1710996606
LQBO01000001
Gammaproteobacteria
Thiomicrospira sp. XS5 [LQBO]
2080652
2080576
-
Met
CAT
[ENA]
¡û
>W1711585453
MNZS01000039
Gammaproteobacteria
Thiomicrospira sp. CG2_30_44_34 [MNZS]
38401
38325
-
Met
CAT
[ENA]
¡û
>C025364
CP000109
Gammaproteobacteria
Hydrogenovibrio crunogenus [CP000109]
1981625
1981549
-
Met
CAT
[Ensembl]
¡û
>W141279821
JAGP01000001
Gammaproteobacteria
Hydrogenovibrio kuenenii DSM 12350 [JAGP]
415453
415529
+
Met
CAT
[ENA]
¡û
>WENV170779651
LZQQ01000939
[LZQQ] oil field metagenome; sample BH-FW-20 from oil reservoir
1735
1811
+
Met
CAT
[ENA]
¢þ
>WENV170779767
LZQR01000367
[LZQR] oil field metagenome; sample BH-FW-24 from oil reservoir
2411
2335
-
Met
CAT
[ENA]
¢þ
>C191011645
CP014470
Gammaproteobacteria
Thiomicrospira sp. S5 [CP014470]
710526
710602
+
Met
CAT
-
¡û
>C191011649
CP014470
Gammaproteobacteria
Thiomicrospira sp. S5 [CP014470]
930175
930251
+
Met
CAT
-
¡û
>C191084391
CP032096
Gammaproteobacteria
Hydrogenovibrio crunogenus SP-41 [CP032096]
2005638
2005562
-
Met
CAT
-
¡û
>C191134046
CP035033
Gammaproteobacteria
Hydrogenovibrio thermophilus JR-2 [CP035033]
2122259
2122183
-
Met
CAT
-
¡û
>W141700062
JMIU01000001
Gammaproteobacteria
Hydrogenovibrio marinus [JMIU]
1005409
1005333
-
Met
CAT
[ENA]
¡û
>W141776949
JOMK01000001
Gammaproteobacteria
Hydrogenovibrio sp. MA2-6 MA2-6 [JOMK]
1336723
1336647
-
Met
CAT
[ENA]
¡û
>W141776998
JOML01000002
Gammaproteobacteria
Hydrogenovibrio marinus DSM 11271 [JOML]
1364019
1363943
-
Met
CAT
[ENA]
¡û
>W141820254
JQMT01000001
Gammaproteobacteria
Hydrogenovibrio sp. Milos-T1 Milos-T1 [JQMT]
386536
386612
+
Met
CAT
[ENA]
¡û
>W1810185552
PKGB01000019
Gammaproteobacteria
Hydrogenovibrio sp. SC-1 [PKGB]
717
793
+
Met
CAT
[ENA]
¡û
>ENV09001646
ACQI01000296
Hydrothermal vent metagenome LCHCB.C1
237
313
+
Met
CAT
[ENA]
¡û
>W1610851263
LQBO01000001
Gammaproteobacteria
Thiomicrospira sp. XS5 [LQBO]
2080652
2080576
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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