This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.166353 (88 seq.)
>W1710856904
LLZS01000007
Alphaproteobacteria
Novosphingobium fuchskuhlense [LLZS]
556014
556090
+
Arg
ACG
[ENA]
¡û
>W1711294786
MABH01000225
Alphaproteobacteria
Cereibacter johrii [MABH]
17164
17088
-
Arg
ACG
[ENA]
¡û
>W1711386337
MEFF01000034
Alphaproteobacteria
Sphingobium sp. SCN 64-10 [MEFF]
5140
5216
+
Arg
ACG
[ENA]
¡û
>W1711434801
MINO01000004
Alphaproteobacteria
Sphingobium phenoxybenzoativorans [MINO]
146918
146842
-
Arg
ACG
[ENA]
¡û
>W1712076959
NGUN01000003
Alphaproteobacteria
Sphingobium sp. GW456-12-10-14-TSB1 [NGUN]
1080302
1080378
+
Arg
ACG
[ENA]
¡û
>W1712076960
NGUN01000003
Alphaproteobacteria
Sphingobium sp. GW456-12-10-14-TSB1 [NGUN]
1080435
1080511
+
Arg
ACG
[ENA]
¡û
>W1712105756
NISJ01000001
Alphaproteobacteria
Sphingopyxis witflariensis [NISJ]
827705
827629
-
Arg
ACG
[ENA]
¡û
>W1712105819
NISK01000002
Alphaproteobacteria
Sphingopyxis bauzanensis [NISK]
155132
155056
-
Arg
ACG
[ENA]
¡û
>C171030399
CP014168
Alphaproteobacteria
Sphingomonas panacis DCY99 [CP014168]
4541146
4541070
-
Arg
ACG
-
¡û
>W131216077
ATVN01000016
Alphaproteobacteria
Pseudorhodobacter ferrugineus DSM 5888 [ATVN]
32146
32222
+
Arg
ACG
[ENA]
¡û
>W131241114
BARE01000007
Alphaproteobacteria
Sphingobium xenophagum NBRC 107872 [BARE]
93864
93940
+
Arg
ACG
[ENA]
¡û
>W131241115
BARE01000007
Alphaproteobacteria
Sphingobium xenophagum NBRC 107872 [BARE]
93997
94073
+
Arg
ACG
[ENA]
¡û
>W131160333
AQWM01000003
Alphaproteobacteria
Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896 [AQWM]
3186
3110
-
Arg
ACG
[ENA]
¡û
>C019227
CP000143
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [CP000143, CP000144]
2813748
2813672
-
Arg
ACG
[Ensembl]
¡û
>C019750
CP000356
Alphaproteobacteria
Sphingopyxis alaskensis RB2256 [CP000356]
1688635
1688559
-
Arg
ACG
[Ensembl]
¡û
>WENV180016333
FSUR01000195
[FSUR] metagenome; soil
15649
15573
-
Arg
ACG
[ENA]
¢þ
>WENV180016553
FSVH01000146
[FSVH] metagenome; soil
83913
83837
-
Arg
ACG
[ENA]
¢þ
>WENV180018590
FSZW01000037
[FSZW] metagenome; soil
78
2
-
Arg
ACG
[ENA]
¢þ
>WENV180020596
FTCZ01006922
[FTCZ] metagenome; soil
58356
58280
-
Arg
ACG
[ENA]
¢þ
>WENV180020660
FTCZ01007966
[FTCZ] metagenome; soil
8041
8117
+
Arg
ACG
[ENA]
¢þ
>WENV180020768
FTDB01001298
[FTDB] metagenome; soil
11073
11149
+
Arg
ACG
[ENA]
¢þ
>WENV180020806
FTDB01002169
[FTDB] metagenome; soil
18822
18898
+
Arg
ACG
[ENA]
¢þ
>WENV180020855
FTDC01000230
[FTDC] metagenome; soil
14439
14363
-
Arg
ACG
[ENA]
¢þ
>WENV180021009
FTDJ01000946
[FTDJ] metagenome; soil
2433
2509
+
Arg
ACG
[ENA]
¢þ
>WENV180025834
FTIQ01237699
[FTIQ] metagenome; soil
156
80
-
Arg
ACG
[ENA]
¢þ
>WENV180027130
FTIW01181659
[FTIW] metagenome; soil
79
155
+
Arg
ACG
[ENA]
¢þ
>WENV180027532
FTIZ01002870
[FTIZ] metagenome; soil
21655
21731
+
Arg
ACG
[ENA]
¢þ
>WENV180027596
FTIZ01006000
[FTIZ] metagenome; soil
1641
1717
+
Arg
ACG
[ENA]
¢þ
>WENV180027639
FTIZ01014021
[FTIZ] metagenome; soil
1
77
+
Arg
ACG
[ENA]
¢þ
>WENV180027760
FTIZ01066443
[FTIZ] metagenome; soil
435
511
+
Arg
ACG
[ENA]
¢þ
>WENV180027998
FTIZ01463154
[FTIZ] metagenome; soil
998
922
-
Arg
ACG
[ENA]
¢þ
>WENV180028773
FTJH01000024
[FTJH] metagenome; soil
77
1
-
Arg
ACG
[ENA]
¢þ
>WENV180028998
FTJI01001737
[FTJI] metagenome; soil
2621
2545
-
Arg
ACG
[ENA]
¢þ
>WENV180033205
FTKF01040973
[FTKF] metagenome; soil
1044
968
-
Arg
ACG
[ENA]
¢þ
>WENV180033247
FTKF01127563
[FTKF] metagenome; soil
77
1
-
Arg
ACG
[ENA]
¢þ
>WENV180033933
FTKM01001950
[FTKM] metagenome; soil
290166
290090
-
Arg
ACG
[ENA]
¢þ
>WENV180034522
FTKR01001742
[FTKR] metagenome; soil
2621
2545
-
Arg
ACG
[ENA]
¢þ
>WENV180035238
FTKT01021175
[FTKT] metagenome; soil
709
633
-
Arg
ACG
[ENA]
¢þ
>WENV180036173
FTLB01533843
[FTLB] metagenome; soil
1447
1523
+
Arg
ACG
[ENA]
¢þ
>WENV181226742
OFDN01000032
[OFDN] hot springs metagenome; Water
137742
137818
+
Arg
ACG
[ENA]
¢þ
>W141136686
AWGB01000017
Alphaproteobacteria
Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896 [AWGB]
914
838
-
Arg
ACG
[ENA]
¡û
>W141136746
AWGC01000049
Alphaproteobacteria
Asticcacaulis sp. AC402 [AWGC]
8256
8180
-
Arg
ACG
[ENA]
¡û
>W141136768
AWGD01000019
Alphaproteobacteria
Asticcacaulis sp. AC460 [AWGD]
120402
120478
+
Arg
ACG
[ENA]
¡û
>W141136803
AWGE01000001
Alphaproteobacteria
Asticcacaulis sp. AC466 [AWGE]
805314
805390
+
Arg
ACG
[ENA]
¡û
>WENV181401193
OFSF01077474
[OFSF] wastewater metagenome; Exp Tend VB 100WW
258
334
+
Arg
ACG
[ENA]
¢þ
>W141191356
AYOY01000173
Alphaproteobacteria
Sphingobium sp. C100 [AYOY]
23351
23275
-
Arg
ACG
[ENA]
¡û
>W141191357
AYOY01000173
Alphaproteobacteria
Sphingobium sp. C100 [AYOY]
23221
23145
-
Arg
ACG
[ENA]
¡û
>WENV183696985
OUNJ010000080
[OUNJ] metagenome; soil
35273
35349
+
Arg
ACG
[ENA]
¢þ
>WENV183697190
OUNJ010051748
[OUNJ] metagenome; soil
432
508
+
Arg
ACG
[ENA]
¢þ
>WENV183697207
OUNJ010075373
[OUNJ] metagenome; soil
59
135
+
Arg
ACG
[ENA]
¢þ
>WENV183728214
PJTQ01000001
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
26075
25999
-
Arg
ACG
[ENA]
¢þ
>WENV183739714
PJUF01000001
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
26075
25999
-
Arg
ACG
[ENA]
¢þ
>WENV170136369
CENV01027427
[CENV] marine metagenome genome assembly TARA_031_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2608
2684
+
Arg
ACG
[ENA]
¢þ
>WENV170136370
CENV01027427
[CENV] marine metagenome genome assembly TARA_031_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2741
2817
+
Arg
ACG
[ENA]
¢þ
>WENV170705220
LLEQ01000375
[LLEQ] bioreactor metagenome; day86 25degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
682
758
+
Arg
ACG
[ENA]
¢þ
>WENV170961841
MLJW01002459
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
941
865
-
Arg
ACG
[ENA]
¢þ
>WENV170974226
MTKY01055930
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1173
1249
+
Arg
ACG
[ENA]
¢þ
>W141485051
JFZB01000059
Alphaproteobacteria
Paenirhodobacter enshiensis [JFZB]
13122
13198
+
Arg
ACG
[ENA]
¡û
>C181056230
CP022048
Alphaproteobacteria
Brevundimonas vesicularis FDAARGOS_289 [CP022048]
1864220
1864296
+
Arg
ACG
-
¡û
>C181072099
CP022745
Alphaproteobacteria
Sphingobium xenophagum C1 [CP022745, CP022746]
2598725
2598801
+
Arg
ACG
-
¡û
>C181072100
CP022745
Alphaproteobacteria
Sphingobium xenophagum C1 [CP022745, CP022746]
2598858
2598934
+
Arg
ACG
-
¡û
>C181084420
CP023548
Alphaproteobacteria
Rhodobacter sp. CZR27 [CP023548]
2900907
2900831
-
Arg
ACG
-
¡û
>C191173500
CP039964
Alphaproteobacteria
Pseudorhodobacter turbinis S12M18 [CP039964]
1123741
1123665
-
Arg
ACG
-
¡û
>W1910007001
BBQY01000014
Alphaproteobacteria
Sphingobium xenophagum OW59 [BBQY]
66158
66234
+
Arg
ACG
[ENA]
¡û
>W1910007002
BBQY01000014
Alphaproteobacteria
Sphingobium xenophagum OW59 [BBQY]
66291
66367
+
Arg
ACG
[ENA]
¡û
>C09109065
CP001150
Alphaproteobacteria
Cereibacter sphaeroides KD131 KD131; KCTC 12085 [CP001150, CP001151]
2487128
2487052
-
Arg
ACG
[Ensembl]
¡û
>W1910548863
FZOV01000002
Alphaproteobacteria
Cereibacter sphaeroides DSM 18937 [FZOV]
487003
486927
-
Arg
ACG
[ENA]
¡û
>W1810005696
BFBR01000007
Alphaproteobacteria
Candidatus Phycosocius bacilliformis bacilliformis BOTRYCO-2 [BFBR]
60892
60816
-
Arg
ACG
[ENA]
¡û
>W1810400862
PYGL01000003
Alphaproteobacteria
Sphingobium sp. AEW4 [PYGL]
299689
299613
-
Arg
ACG
[ENA]
¡û
>W1810477353
QAOT01000001
Alphaproteobacteria
Cereibacter azotoformans KA25 [QAOT]
216852
216928
+
Arg
ACG
[ENA]
¡û
>W1810721636
QNSD01000013
Alphaproteobacteria
Rhodobacter sp. 140A [QNSD]
64172
64096
-
Arg
ACG
[ENA]
¡û
>W1511390138
JSXI01000022
Alphaproteobacteria
Sphingomonas sp. ERG5 [JSXI]
49302
49378
+
Arg
ACG
[ENA]
¡û
>W11123375
ADUH01000095
Alphaproteobacteria
Asticcacaulis biprosthecium C19 [ADUH]
44486
44562
+
Arg
ACG
[ENA]
¡û
>W1511698355
LGHS01000007
Alphaproteobacteria
Pseudorhodobacter aquimaris KCTC 23043 [LGHS]
5211
5135
-
Arg
ACG
[ENA]
¡û
>W1511698425
LGHT01000042
Alphaproteobacteria
Pseudorhodobacter wandonensis KCTC 23672 [LGHT]
112308
112232
-
Arg
ACG
[ENA]
¡û
>W1511698463
LGHU01000081
Alphaproteobacteria
Pseudorhodobacter antarcticus KCTC 23700 [LGHU]
12543
12619
+
Arg
ACG
[ENA]
¡û
>W1511698510
LGHV01000046
Alphaproteobacteria
Pseudorhodobacter ferrugineus LMG 22047 [LGHV]
32292
32368
+
Arg
ACG
[ENA]
¡û
>W121084332
AKIB01000042
Alphaproteobacteria
Sphingobium xenophagum QYY [AKIB]
15582
15506
-
Arg
ACG
[ENA]
¡û
>W121084333
AKIB01000042
Alphaproteobacteria
Sphingobium xenophagum QYY [AKIB]
15449
15373
-
Arg
ACG
[ENA]
¡û
>W1610719285
LLZS01000007
Alphaproteobacteria
Novosphingobium fuchskuhlense [LLZS]
556014
556090
+
Arg
ACG
[ENA]
¡û
>W1710084629
BDMM01000004
Alphaproteobacteria
Brevundimonas sp. SH203 [BDMM]
304619
304543
-
Arg
ACG
[ENA]
¡û
>W1710505463
FMTS01000001
Alphaproteobacteria
Asticcacaulis taihuensis [FMTS]
1116036
1115960
-
Arg
ACG
[ENA]
¡û
>W1710505619
FMTU01000020
Alphaproteobacteria
Sphingobium faniae [FMTU]
23903
23979
+
Arg
ACG
[ENA]
¡û
>W1710509098
FMWX01000001
Alphaproteobacteria
Sphingomonas sp. NFR15 [FMWX]
512938
512862
-
Arg
ACG
[ENA]
¡û
>W1710546957
FOCO01000010
Alphaproteobacteria
Pseudorhodobacter antarcticus [FOCO]
45399
45475
+
Arg
ACG
[ENA]
¡û
>W1710551556
FOGE01000002
Alphaproteobacteria
Sphingobium sp. YR768 [FOGE]
138814
138890
+
Arg
ACG
[ENA]
¡û
>W1710551557
FOGE01000002
Alphaproteobacteria
Sphingobium sp. YR768 [FOGE]
138945
139021
+
Arg
ACG
[ENA]
¡û
>W1710551558
FOGE01000002
Alphaproteobacteria
Sphingobium sp. YR768 [FOGE]
139076
139152
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK