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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.166468 (25 seq.)
>WENV180392300
OBPO01038329
[OBPO] marine metagenome; seawater
381
307
-
Ile2
CAT
[ENA]
¡û
>WENV180636641
OCRF01028252
[OCRF] marine metagenome; niskin bottle
531
605
+
Ile2
CAT
[ENA]
¡û
>WENV181092927
OEBK01109319
[OEBK] marine metagenome; ENVO:00002010 for 'seawater
75
1
-
Ile2
CAT
[ENA]
¡û
>WENV181392208
OFRW01011392
[OFRW] seawater metagenome; seawater
532
458
-
Ile2
CAT
[ENA]
¡û
>WENV181392978
OFRX01025756
[OFRX] seawater metagenome; seawater
246
320
+
Ile2
CAT
[ENA]
¡û
>WENV182556539
OJDG01015129
[OJDG] seawater metagenome; Sea water
463
388
-
Ile2
CAT
[ENA]
¡û
>WENV182569597
OJEZ01021000
[OJEZ] seawater metagenome; Sea water
191
115
-
Ile2
CAT
[ENA]
¡û
>WENV182571736
OJFK01008835
[OJFK] seawater metagenome; Sea water
1280
1356
+
Ile2
CAT
[ENA]
¡û
>WENV182584187
OJHF01020409
[OJHF] seawater metagenome; Sea water
521
447
-
Ile2
CAT
[ENA]
¡û
>WENV182588973
OJHY01005555
[OJHY] seawater metagenome; Sea water
1138
1212
+
Ile2
CAT
[ENA]
¡û
>WENV183626682
OOGJ01009908
[OOGJ] marine metagenome; seawater
312
238
-
Ile2
CAT
[ENA]
¡û
>WENV183626929
OOGK01011791
[OOGK] marine metagenome; seawater
426
500
+
Ile2
CAT
[ENA]
¡û
>WENV183629343
OOGP01026133
[OOGP] marine metagenome; seawater
246
320
+
Ile2
CAT
[ENA]
¡û
>WENV183630596
OOGS01055999
[OOGS] marine metagenome; seawater
78
4
-
Ile2
CAT
[ENA]
¡û
>WENV170274687
CERM01034952
[CERM] marine metagenome genome assembly TARA_067_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
761
685
-
Met
CAT
[ENA]
¡û
>WENV170386993
CETY01271016
[CETY] marine metagenome genome assembly TARA_133_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
274
350
+
Met
CAT
[ENA]
¡û
>WENV170402358
CEUE01400542
[CEUE] marine metagenome genome assembly TARA_133_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
138
214
+
Met
CAT
[ENA]
¡û
>WENV170535197
CEWP01033400
[CEWP] marine metagenome genome assembly TARA_067_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
5385
5309
-
Met
CAT
[ENA]
¡û
>WENV170568464
FLMP01041599
[FLMP] seawater metagenome; seawater
151
75
-
Met
CAT
[ENA]
¡û
>WENV170597297
FUIF01023455
[FUIF] marine metagenome; marine
1249
1173
-
Met
CAT
[ENA]
¡û
>WENV170814915
MDSX01001252
[MDSX] marine metagenome; seawater
10200
10124
-
Met
CAT
[ENA]
¡û
>WENV170819533
MDSX01094482
[MDSX] marine metagenome; seawater
911
835
-
Met
CAT
[ENA]
¡û
>WENV170883328
MDTC01164377
[MDTC] marine metagenome; seawater
11746
11670
-
Met
CAT
[ENA]
¡û
>WENV171002637
NHNJ01110716
[NHNJ] marine metagenome; surface waters at 20 m depth at the end of the Scripps Institution of Oceanography (SIO) pier
235
311
+
Met
CAT
[ENA]
¡û
>WENV055344
AACY023222363
Marine microbial communities from Global Ocean Sampling (GOS)
1381
1305
-
Met
CAT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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