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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.166633 (8 seq.)
>WENV181836385
OGVJ01006060
[OGVJ] freshwater metagenome; freshwater
300
374
+
Met
CAT
[ENA]
¡û
>WENV181836734
OGVJ01024155
[OGVJ] freshwater metagenome; freshwater
712
637
-
Met
CAT
[ENA]
¡û
>WENV181848032
OGVZ01001505
[OGVZ] freshwater metagenome; freshwater
1871
1945
+
Met
CAT
[ENA]
¡û
>WENV181850883
OGWE01001767
[OGWE] freshwater metagenome; freshwater
1785
1711
-
Met
CAT
[ENA]
¡û
>WENV181852248
OGWF01010886
[OGWF] freshwater metagenome; freshwater
407
331
-
Ile2
CAT
[ENA]
¡û
>WENV181856803
OGWN01017908
[OGWN] freshwater metagenome; freshwater
299
225
-
Met
CAT
[ENA]
¡û
>WENV061827
AACY023441817
Marine microbial communities from Global Ocean Sampling (GOS)
1320
1244
-
Met
CAT
[ENA]
>WENV006790
AACY020179663
Marine microbial communities from Global Ocean Sampling (GOS)
1116
1040
-
Met
CAT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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