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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.166644 (8 seq.)
>W131237931
AUSF01000060
Bacteroidota
Bacteroidetes bacterium SCGC AAA027-G08 [AUSF]
21602
21676
+
Met
CAT
[ENA]
¡û
>WENV181377272
OFRA01006013
[OFRA] wastewater metagenome; Lake Maggiore Verbania
1553
1479
-
Met
CAT
[ENA]
¡û
>WENV181387311
OFRL01083039
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
95
21
-
Met
CAT
[ENA]
¡û
>WENV181839103
OGVN01067881
[OGVN] freshwater metagenome; freshwater
122
196
+
Met
CAT
[ENA]
¡û
>WENV170601577
FUWD010181125
[FUWD] metagenome; unknown
225
299
+
Met
CAT
[ENA]
¡û
>WENV170604320
FUWD010385718
[FUWD] metagenome; unknown
461
535
+
Met
CAT
[ENA]
¡û
>WENV044068
AACY022386254
Marine microbial communities from Global Ocean Sampling (GOS)
293
217
-
Met
CAT
[ENA]
>WENV058331
AACY023324913
Marine microbial communities from Global Ocean Sampling (GOS)
1084
1006
-
Met
CAT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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