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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.166649 (131 seq.)
>W1710813548
LKJQ01000003
Gammaproteobacteria
Aeromonas veronii [LKJQ]
43460
43384
-
Arg
CCT
[ENA]
¡û
>W1710814122
LKJV01000057
Gammaproteobacteria
Aeromonas veronii [LKJV]
125998
126074
+
Arg
CCT
[ENA]
¡û
>W1710814376
LKJY01000003
Gammaproteobacteria
Aeromonas veronii [LKJY]
125998
126074
+
Arg
CCT
[ENA]
¡û
>W1710814546
LKKA01000003
Gammaproteobacteria
Aeromonas veronii [LKKA]
125998
126074
+
Arg
CCT
[ENA]
¡û
>W1710814652
LKKB01000003
Gammaproteobacteria
Aeromonas veronii [LKKB]
125998
126074
+
Arg
CCT
[ENA]
¡û
>W1710814848
LKKC01000068
Gammaproteobacteria
Aeromonas veronii [LKKC]
126317
126393
+
Arg
CCT
[ENA]
¡û
>W1710814926
LKKD01000044
Gammaproteobacteria
Aeromonas veronii [LKKD]
126317
126393
+
Arg
CCT
[ENA]
¡û
>W1710815049
LKKE01000043
Gammaproteobacteria
Aeromonas veronii [LKKE]
125998
126074
+
Arg
CCT
[ENA]
¡û
>W1710815088
LKKF01000004
Gammaproteobacteria
Aeromonas veronii [LKKF]
125998
126074
+
Arg
CCT
[ENA]
¡û
>W1710815197
LKKG01000004
Gammaproteobacteria
Aeromonas veronii [LKKG]
125879
125955
+
Arg
CCT
[ENA]
¡û
>W1710881934
LMTK01000036
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [LMTK]
117821
117897
+
Arg
CCT
[ENA]
¡û
>W1711071542
LSGV01000020
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [LSGV]
76139
76215
+
Arg
CCT
[ENA]
¡û
>W1711071628
LSGW01000044
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [LSGW]
141731
141807
+
Arg
CCT
[ENA]
¡û
>W1711071743
LSGX01000061
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [LSGX]
46759
46683
-
Arg
CCT
[ENA]
¡û
>W1711071799
LSGY01000056
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [LSGY]
76139
76215
+
Arg
CCT
[ENA]
¡û
>W1711121235
LUHP01000128
Gammaproteobacteria
Aeromonas salmonicida [LUHP]
38233
38157
-
Arg
CCT
[ENA]
¡û
>W1711212667
LXJN01000474
Gammaproteobacteria
Aeromonas veronii [LXJN]
7837
7761
-
Arg
CCT
[ENA]
¡û
>W1711256310
LYSQ01000004
Gammaproteobacteria
Aeromonas sp. DNP9 [LYSQ]
94819
94895
+
Arg
CCT
[ENA]
¡û
>W1711256428
LYSR01000046
Gammaproteobacteria
Aeromonas sp. ANNP30 [LYSR]
1310
1234
-
Arg
CCT
[ENA]
¡û
>W1711256514
LYSS01000044
Gammaproteobacteria
Aeromonas sp. ANP5 [LYSS]
36157
36233
+
Arg
CCT
[ENA]
¡û
>W1711262132
LYXO01000040
Gammaproteobacteria
Aeromonas piscicola [LYXO]
40465
40389
-
Arg
CCT
[ENA]
¡û
>W131146050
AQGQ01000029
Gammaproteobacteria
Aeromonas molluscorum 848 [AQGQ]
657
581
-
Arg
CCT
[ENA]
¡û
>W1711429130
MIIM01000036
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [MIIM]
2535
2611
+
Arg
CCT
[ENA]
¡û
>W1711429216
MIIN01000001
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [MIIN]
197990
197914
-
Arg
CCT
[ENA]
¡û
>W1711429351
MIIO01000023
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [MIIO]
60314
60238
-
Arg
CCT
[ENA]
¡û
>W1711429440
MIIP01000055
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [MIIP]
76454
76378
-
Arg
CCT
[ENA]
¡û
>W1711429728
MIIS01000001
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [MIIS]
197212
197136
-
Arg
CCT
[ENA]
¡û
>W1711429929
MIIU01000001
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [MIIU]
197990
197914
-
Arg
CCT
[ENA]
¡û
>W1711487195
MKFU01000010
Gammaproteobacteria
Aeromonas sobria [MKFU]
51812
51888
+
Arg
CCT
[ENA]
¡û
>W1711684027
MRZQ01000015
Gammaproteobacteria
Aeromonas veronii [MRZQ]
127677
127753
+
Arg
CCT
[ENA]
¡û
>W1711684096
MRZR01000003
Gammaproteobacteria
Aeromonas veronii bv. veronii [MRZR]
276939
277015
+
Arg
CCT
[ENA]
¡û
>C171120993
CP021654
Gammaproteobacteria
Aeromonas salmonicida O23A [CP021654]
2722628
2722704
+
Arg
CCT
-
¡û
>C001084
CP000644
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida A449 [CP000644]
3507115
3507191
+
Arg
CCT
[Ensembl]
¡û
>W131044093
AMQG01000229
Gammaproteobacteria
Aeromonas salmonicida subsp. achromogenes AS03 [AMQG]
2488
2564
+
Arg
CCT
[ENA]
¡û
>W141007132
AGWT01000023
Gammaproteobacteria
Aeromonas veronii AER39 [AGWT]
314764
314840
+
Arg
CCT
[ENA]
¡û
>W141053468
ANNT01000317
Gammaproteobacteria
Aeromonas veronii PhIn2 [ANNT]
97
21
-
Arg
CCT
[ENA]
¡û
>W141067055
ARYZ01000065
Gammaproteobacteria
Aeromonas salmonicida subsp. pectinolytica 34mel [ARYZ]
22811
22735
-
Arg
CCT
[ENA]
¡û
>WENV181193542
OEQN01000182
[OEQN] metagenome; water of meat washing
7940
7864
-
Arg
CCT
[ENA]
¢þ
>WENV181196250
OEQX01000011
[OEQX] metagenome; water of meat washing
87852
87776
-
Arg
CCT
[ENA]
¢þ
>WENV181198178
OERD01000301
[OERD] metagenome; water of meat washing
361
285
-
Arg
CCT
[ENA]
¢þ
>WENV181199455
OERH01001111
[OERH] metagenome; water of meat washing
3073
3149
+
Arg
CCT
[ENA]
¢þ
>WENV181200271
OERK01000117
[OERK] metagenome; water of meat washing
11346
11422
+
Arg
CCT
[ENA]
¢þ
>WENV181201050
OERM01000553
[OERM] metagenome; water of meat washing
4878
4802
-
Arg
CCT
[ENA]
¢þ
>WENV181201555
OERO01003607
[OERO] metagenome; water of meat washing
1213
1137
-
Arg
CCT
[ENA]
¢þ
>WENV181203000
OERT01000113
[OERT] metagenome; water of meat washing
2874
2950
+
Arg
CCT
[ENA]
¢þ
>WENV181203219
OERV01000011
[OERV] metagenome; water of meat washing
90713
90789
+
Arg
CCT
[ENA]
¢þ
>WENV183023497
OLFS01001320
[OLFS] human gut metagenome; faeces
16907
16831
-
Arg
CCT
[ENA]
¢þ
>C181023815
CP017143
Gammaproteobacteria
Aeromonas salmonicida subsp. masoucida RFAS1 [CP017143]
4299815
4299891
+
Arg
CCT
-
¡û
>C181060088
CP022175
Gammaproteobacteria
Aeromonas salmonicida S121 [CP022175]
3352115
3352191
+
Arg
CCT
-
¡û
>C181060207
CP022181
Gammaproteobacteria
Aeromonas salmonicida S44 [CP022181]
3344150
3344226
+
Arg
CCT
-
¡û
>C181060326
CP022186
Gammaproteobacteria
Aeromonas salmonicida S68 [CP022186]
3358960
3359036
+
Arg
CCT
-
¡û
>C181064687
CP022426
Gammaproteobacteria
Aeromonas salmonicida subsp. pectinolytica 34mel [CP022426]
1297414
1297338
-
Arg
CCT
-
¡û
>C181091152
CP023818
Gammaproteobacteria
Aeromonas sp. CA23 [CP023818]
5033096
5033172
+
Arg
CCT
-
¡û
>C181108916
CP024933
Gammaproteobacteria
Aeromonas veronii X12 [CP024933]
3564741
3564817
+
Arg
CCT
-
¡û
>C181167049
CP028568
Gammaproteobacteria
Aeromonas hydrophila subsp. hydrophila WCHAH045096 [CP028568]
1245401
1245325
-
Arg
CCT
-
¡û
>C191050025
CP027000
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida 01-B526 [CP027000]
3543839
3543915
+
Arg
CCT
-
¡û
>C191056394
CP028133
Gammaproteobacteria
Aeromonas veronii 17ISAe [CP028133]
2353600
2353676
+
Arg
CCT
-
¡û
>C191108320
CP033604
Gammaproteobacteria
Aeromonas veronii MS-18-37 [CP033604]
3637311
3637387
+
Arg
CCT
-
¡û
>W141822765
JRBE01000001
Gammaproteobacteria
Aeromonas veronii [JRBE]
513486
513562
+
Arg
CCT
[ENA]
¡û
>W1910619939
LJZX01000014
Gammaproteobacteria
Aeromonas sobria JF2635 [LJZX]
66120
66196
+
Arg
CCT
[ENA]
¡û
>W1910634871
LMTT01000001
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida M22710-11 [LMTT]
197916
197840
-
Arg
CCT
[ENA]
¡û
>W1910635527
LNGB01000001
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida m11743-09 [LNGB]
197916
197840
-
Arg
CCT
[ENA]
¡û
>W1910941975
NJGB01000035
Gammaproteobacteria
Aeromonas veronii A29 [NJGB]
50790
50866
+
Arg
CCT
[ENA]
¡û
>W1911075606
NMUR01000022
Gammaproteobacteria
Aeromonas veronii NS [NMUR]
54042
54118
+
Arg
CCT
[ENA]
¡û
>W1911075731
NMUS01000034
Gammaproteobacteria
Aeromonas veronii PDB [NMUS]
54169
54245
+
Arg
CCT
[ENA]
¡û
>W1911085182
NNSE01000010
Gammaproteobacteria
Aeromonas veronii 5.28.6 [NNSE]
94675
94751
+
Arg
CCT
[ENA]
¡û
>W1911085274
NNSF01000007
Gammaproteobacteria
Aeromonas veronii VCK [NNSF]
94537
94613
+
Arg
CCT
[ENA]
¡û
>W1911155595
NPKC01000036
Gammaproteobacteria
Aeromonas veronii 6.15.2 [NPKC]
3640
3564
-
Arg
CCT
[ENA]
¡û
>W1911155661
NPKD01000015
Gammaproteobacteria
Aeromonas veronii 50A [NPKD]
94669
94745
+
Arg
CCT
[ENA]
¡û
>W1911155799
NPKE01000023
Gammaproteobacteria
Aeromonas veronii NS2 [NPKE]
3708
3632
-
Arg
CCT
[ENA]
¡û
>W1911178525
NQMJ01000065
Gammaproteobacteria
Aeromonas salmonicida M18076-11 [NQMJ]
19713
19789
+
Arg
CCT
[ENA]
¡û
>W1911178721
NQMM01000018
Gammaproteobacteria
Aeromonas sobria TM18 [NQMM]
3351
3275
-
Arg
CCT
[ENA]
¡û
>W1911420384
NXBQ01000010
Gammaproteobacteria
Aeromonas bivalvium ZJ19-2 [NXBQ]
67903
67979
+
Arg
CCT
[ENA]
¡û
>W1911420692
NXBU01000001
Gammaproteobacteria
Aeromonas veronii Z2-7 [NXBU]
779254
779330
+
Arg
CCT
[ENA]
¡û
>W1911421070
NXBY01000004
Gammaproteobacteria
Aeromonas veronii ZJ12-3 [NXBY]
110049
109973
-
Arg
CCT
[ENA]
¡û
>W1911630252
PSZI01000001
Gammaproteobacteria
Aeromonas salmonicida AJ83 [PSZI]
248664
248740
+
Arg
CCT
[ENA]
¡û
>W1911630361
PSZJ01000001
Gammaproteobacteria
Aeromonas salmonicida A308 [PSZJ]
186004
186080
+
Arg
CCT
[ENA]
¡û
>W1911630487
PSZK01000001
Gammaproteobacteria
Aeromonas salmonicida 947C [PSZK]
242788
242712
-
Arg
CCT
[ENA]
¡û
>W1810242190
PPUW01000001
Gammaproteobacteria
Aeromonas veronii ML09-123 [PPUW]
216814
216890
+
Arg
CCT
[ENA]
¡û
>W1810242323
PPUX01000003
Gammaproteobacteria
Aeromonas bestiarum GA97-22 [PPUX]
323249
323325
+
Arg
CCT
[ENA]
¡û
>W1810390582
PXYZ01000001
Gammaproteobacteria
Aeromonas veronii ZWY-AV1 [PXYZ]
284985
284909
-
Arg
CCT
[ENA]
¡û
>W1810445327
PZKL01000012
Gammaproteobacteria
Aeromonas veronii XH.VA.1 [PZKL]
217131
217207
+
Arg
CCT
[ENA]
¡û
>W1810474249
QAIE01000101
Gammaproteobacteria
Aeromonas sp. HMWF036 [QAIE]
9355
9431
+
Arg
CCT
[ENA]
¡û
>W1810474930
QAIP01000517
Gammaproteobacteria
Aeromonas sp. HMWF014 [QAIP]
8161
8085
-
Arg
CCT
[ENA]
¡û
>W1810475576
QAJD01000039
Gammaproteobacteria
Aeromonas sp. HMWF017 [QAJD]
49245
49321
+
Arg
CCT
[ENA]
¡û
>W1810629324
QIMH01000004
Gammaproteobacteria
Aeromonas veronii E2102 [QIMH]
126345
126421
+
Arg
CCT
[ENA]
¡û
>W1810779905
QQOQ01000001
Gammaproteobacteria
Aeromonas veronii XH.VA.2 [QQOQ]
217332
217408
+
Arg
CCT
[ENA]
¡û
>W1510064805
CDBI01000061
Gammaproteobacteria
Aeromonas popoffii CIP 105493 [CDBI]
27762
27686
-
Arg
CCT
[ENA]
¡û
>W1510064868
CDBJ01000042
Gammaproteobacteria
Aeromonas rivuli DSM 22539 [CDBJ]
131470
131394
-
Arg
CCT
[ENA]
¡û
>W1510065026
CDBL01000034
Gammaproteobacteria
Aeromonas piscicola LMG 24783 [CDBL]
60128
60052
-
Arg
CCT
[ENA]
¡û
>W1510065431
CDBQ01000015
Gammaproteobacteria
Aeromonas veronii bv. sobria LMG 13067 [CDBQ]
296162
296086
-
Arg
CCT
[ENA]
¡û
>W1510065783
CDBU01000037
Gammaproteobacteria
Aeromonas veronii CECT 4486 [CDBU]
8354
8278
-
Arg
CCT
[ENA]
¡û
>W1510065946
CDBW01000016
Gammaproteobacteria
Aeromonas sobria CECT 4245 [CDBW]
24022
23946
-
Arg
CCT
[ENA]
¡û
>W1510068247
CDDK01000031
Gammaproteobacteria
Aeromonas veronii bv. veronii CECT 4257 [CDDK]
243831
243907
+
Arg
CCT
[ENA]
¡û
>W1510068671
CDDU01000035
Gammaproteobacteria
Aeromonas veronii CIP 107763 [CDDU]
50806
50882
+
Arg
CCT
[ENA]
¡û
>W1510068831
CDDW01000100
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida CIP 103209 [CDDW]
133894
133970
+
Arg
CCT
[ENA]
¡û
>C11101433
CP002607
Gammaproteobacteria
Aeromonas veronii B565 [CP002607]
3520497
3520573
+
Arg
CCT
[Ensembl]
¡û
>W1511347816
JRJY01000033
Gammaproteobacteria
Aeromonas sp. ZOR0001 [JRJY]
4827
4751
-
Arg
CCT
[ENA]
¡û
>W1511359756
JRYV01000024
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida 2009-144K3 [JRYV]
100241
100165
-
Arg
CCT
[ENA]
¡û
>W1511359853
JRYW01000001
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida 2004-05MF26 [JRYW]
197916
197840
-
Arg
CCT
[ENA]
¡û
>W1511511391
JXTA01000001
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida JF3224 [JXTA]
197925
197849
-
Arg
CCT
[ENA]
¡û
>C161042364
CP012504
Gammaproteobacteria
Aeromonas veronii TH0426 [CP012504]
4026111
4026187
+
Arg
CCT
[Ensembl]
¡û
>C161088709
CP015448
Gammaproteobacteria
Aeromonas veronii CB51 [CP015448]
4244231
4244307
+
Arg
CCT
-
¡û
>W1610461001
FKKY01000001
Gammaproteobacteria
Aeromonas sp. EERV15 [FKKY]
345227
345303
+
Arg
CCT
[ENA]
¡û
>W1610461108
FKKY02000001
Gammaproteobacteria
Aeromonas sp. EERV15 [FKKY]
345227
345303
+
Arg
CCT
[ENA]
¡û
>W1610550999
JYFF01000001
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [JYFF]
197947
197871
-
Arg
CCT
[ENA]
¡û
>W1610551100
JYFG01000001
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [JYFG]
198207
198131
-
Arg
CCT
[ENA]
¡û
>W1610574874
JZTG01000001
Gammaproteobacteria
Aeromonas salmonicida [JZTG]
248673
248749
+
Arg
CCT
[ENA]
¡û
>W1610575173
JZTI01000139
Gammaproteobacteria
Aeromonas salmonicida subsp. smithia [JZTI]
7673
7749
+
Arg
CCT
[ENA]
¡û
>W1610677645
LKJQ01000003
Gammaproteobacteria
Aeromonas veronii [LKJQ]
43460
43384
-
Arg
CCT
[ENA]
¡û
>W1610678219
LKJV01000057
Gammaproteobacteria
Aeromonas veronii [LKJV]
125998
126074
+
Arg
CCT
[ENA]
¡û
>W1610678473
LKJY01000003
Gammaproteobacteria
Aeromonas veronii [LKJY]
125998
126074
+
Arg
CCT
[ENA]
¡û
>W1610678643
LKKA01000003
Gammaproteobacteria
Aeromonas veronii [LKKA]
125998
126074
+
Arg
CCT
[ENA]
¡û
>W1610678749
LKKB01000003
Gammaproteobacteria
Aeromonas veronii [LKKB]
125998
126074
+
Arg
CCT
[ENA]
¡û
>W1610678945
LKKC01000068
Gammaproteobacteria
Aeromonas veronii [LKKC]
126317
126393
+
Arg
CCT
[ENA]
¡û
>W1610679023
LKKD01000044
Gammaproteobacteria
Aeromonas veronii [LKKD]
126317
126393
+
Arg
CCT
[ENA]
¡û
>W1610679146
LKKE01000043
Gammaproteobacteria
Aeromonas veronii [LKKE]
125998
126074
+
Arg
CCT
[ENA]
¡û
>W1610679185
LKKF01000004
Gammaproteobacteria
Aeromonas veronii [LKKF]
125998
126074
+
Arg
CCT
[ENA]
¡û
>W1610679294
LKKG01000004
Gammaproteobacteria
Aeromonas veronii [LKKG]
125879
125955
+
Arg
CCT
[ENA]
¡û
>W1610910802
LSGV01000020
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [LSGV]
76139
76215
+
Arg
CCT
[ENA]
¡û
>W1610910888
LSGW01000044
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [LSGW]
141731
141807
+
Arg
CCT
[ENA]
¡û
>W1610911003
LSGX01000061
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [LSGX]
46759
46683
-
Arg
CCT
[ENA]
¡û
>W1610911059
LSGY01000056
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [LSGY]
76139
76215
+
Arg
CCT
[ENA]
¡û
>W1610999922
LXJN01000474
Gammaproteobacteria
Aeromonas veronii [LXJN]
7837
7761
-
Arg
CCT
[ENA]
¡û
>W1611024055
LYXO01000040
Gammaproteobacteria
Aeromonas piscicola [LYXO]
40465
40389
-
Arg
CCT
[ENA]
¡û
>W1710596828
FTMU01000084
Gammaproteobacteria
Aeromonas veronii [FTMU]
3398
3474
+
Arg
CCT
[ENA]
¡û
>W1710661272
JYFF01000001
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [JYFF]
197947
197871
-
Arg
CCT
[ENA]
¡û
>W1710661373
JYFG01000001
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [JYFG]
198207
198131
-
Arg
CCT
[ENA]
¡û
>W1710692109
JZTG01000001
Gammaproteobacteria
Aeromonas salmonicida [JZTG]
248673
248749
+
Arg
CCT
[ENA]
¡û
>W1710692408
JZTI01000139
Gammaproteobacteria
Aeromonas salmonicida subsp. smithia [JZTI]
7673
7749
+
Arg
CCT
[ENA]
¡û
>W1710694412
LAIS01000175
Gammaproteobacteria
Aeromonas salmonicida subsp. salmonicida [LAIS]
10432
10356
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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