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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.166688 (5 seq.)
>W1711415198
MHAM01000006
Ignavibacteriota
Stygiobacter sp. RIFOXYA12_FULL_38_9 RIFOXYA12_FULL_38_9 [MHAM]
9327
9403
+
Met
CAT
[ENA]
¡û
>W1711415685
MHAZ01000017
Ignavibacteriota
Stygiobacter sp. RIFOXYC2_FULL_38_25 RIFOXYC2_FULL_38_25 [MHAZ]
194734
194810
+
Met
CAT
[ENA]
¡û
>WENV183705089
PDWI01001006
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2924
2998
+
Met
CAT
[ENA]
¡û
>WENV183718247
PDWJ01003015
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
2924
2998
+
Met
CAT
[ENA]
¡û
>WENV040390
AACY022080410
Marine microbial communities from Global Ocean Sampling (GOS)
77
153
+
Met
CAT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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