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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.166688 (78 seq.)
>W131218989
ATYE01000004
Bacteroidota
Asinibacterium sp. OR43 OR43 [ATYE]
67327
67403
+
Asp
GTC
[ENA]
¡û
>W1711502819
MKTB01000005
Bacteroidota
Bacteroidetes bacterium 43-16 [MKTB]
32511
32587
+
Asp
GTC
[ENA]
¡û
>W1711502820
MKTB01000005
Bacteroidota
Bacteroidetes bacterium 43-16 [MKTB]
32655
32731
+
Asp
GTC
[ENA]
¡û
>C171057612
CP017141
Bacteroidota
Pedobacter steynii DX4 [CP017141]
1534497
1534573
+
Asp
GTC
-
¡û
>C171057613
CP017141
Bacteroidota
Pedobacter steynii DX4 [CP017141]
1536060
1536136
+
Asp
GTC
-
¡û
>W131228412
AUFX01000007
Bacteroidota
Sporocytophaga myxococcoides DSM 11118 [AUFX]
101465
101541
+
Asp
GTC
[ENA]
¡û
>WENV180027181
FTIX01000168
[FTIX] metagenome; soil
12689
12615
-
Asp
GTC
[ENA]
¢þ
>WENV180105462
OAPD01063800
[OAPD] marine metagenome; 2010
277
203
-
Asp
GTC
[ENA]
¢þ
>WENV180377789
OBON01122542
[OBON] marine metagenome; sea water
191
117
-
Asp
GTC
[ENA]
¢þ
>WENV181171312
OEIV010195738
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
18
92
+
Asp
GTC
[ENA]
¢þ
>WENV181368932
OFQN01004609
[OFQN] freshwater metagenome; Freshwater Lake
193
267
+
Asp
GTC
[ENA]
¢þ
>WENV181369458
OFQP01002721
[OFQP] freshwater metagenome; Freshwater Lake
1430
1504
+
Asp
GTC
[ENA]
¢þ
>WENV181380313
OFRD01058351
[OFRD] wastewater metagenome; Exp Tend CN 100WW
421
495
+
Asp
GTC
[ENA]
¢þ
>WENV181837930
OGVL01019350
[OGVL] freshwater metagenome; freshwater
440
514
+
Asp
GTC
[ENA]
¢þ
>WENV181847358
OGVY01016207
[OGVY] freshwater metagenome; freshwater
204
278
+
Asp
GTC
[ENA]
¢þ
>W141220194
AZXP01000001
Bacteroidota
Asinibacterium sp. OR53 OR53 [AZXP]
2282496
2282420
-
Asp
GTC
[ENA]
¡û
>WENV183727197
PJTO01011905
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
640
714
+
Asp
GTC
[ENA]
¢þ
>WENV183727198
PJTO01011905
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
783
857
+
Asp
GTC
[ENA]
¢þ
>WENV183728726
PJTQ01000322
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
27403
27477
+
Asp
GTC
[ENA]
¢þ
>WENV183728727
PJTQ01000322
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
27546
27620
+
Asp
GTC
[ENA]
¢þ
>WENV183731719
PJTT01000119
[PJTT] soil metagenome; Soil (2) enriched on wood chips
2076
2002
-
Asp
GTC
[ENA]
¢þ
>WENV183736228
PJUC01000189
[PJUC] soil metagenome; Soil enriched on filter paper
27403
27477
+
Asp
GTC
[ENA]
¢þ
>WENV183736229
PJUC01000189
[PJUC] soil metagenome; Soil enriched on filter paper
27546
27620
+
Asp
GTC
[ENA]
¢þ
>WENV183743244
PJUJ01000210
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
317
243
-
Asp
GTC
[ENA]
¢þ
>WENV183743245
PJUJ01000210
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
173
99
-
Asp
GTC
[ENA]
¢þ
>WENV183744807
PJUL01000275
[PJUL] feces metagenome; Chicken feces enriched on filter paper
317
243
-
Asp
GTC
[ENA]
¢þ
>WENV183744808
PJUL01000275
[PJUL] feces metagenome; Chicken feces enriched on filter paper
173
99
-
Asp
GTC
[ENA]
¢þ
>WENV170551392
CXWJ01006415
[CXWJ] wastewater metagenome; activated sludge
1095
1019
-
Asp
GTC
[ENA]
¢þ
>WENV170604339
FUWD010388130
[FUWD] metagenome; unknown
395
319
-
Asp
GTC
[ENA]
¢þ
>C181094365
CP024091
Bacteroidota
Pedobacter ginsengisoli T01R-27 [CP024091]
4243477
4243403
-
Asp
GTC
-
¡û
>C191153642
CP037755
Bacteroidota
Pseudocnuella soli 17J28-1 [CP037755]
14381
14455
+
Asp
GTC
-
¡û
>C191153670
CP037755
Bacteroidota
Pseudocnuella soli 17J28-1 [CP037755]
3988696
3988770
+
Asp
GTC
-
¡û
>C191226425
LS999839
Bacteroidota
Pedobacter schmidteae eg [LS999839]
1369429
1369503
+
Asp
GTC
-
¡û
>C191226426
LS999839
Bacteroidota
Pedobacter schmidteae eg [LS999839]
1369580
1369654
+
Asp
GTC
-
¡û
>W09109598
ABUJ01000006
Bacteroidota
Pedobacter heparinus DSM 2366 [ABUJ]
13340
13416
+
Asp
GTC
[ENA]
¡û
>W1911385599
NVQB01000001
Bacteroidota
Sphingobacteriaceae bacterium SH-48 [NVQB]
4579928
4579854
-
Asp
GTC
[ENA]
¡û
>W1911647227
QAJI01000001
Bacteroidota
Taibaiella sp. KBW10 [QAJI]
698470
698396
-
Asp
GTC
[ENA]
¡û
>W1911647228
QAJI01000001
Bacteroidota
Taibaiella sp. KBW10 [QAJI]
678881
678807
-
Asp
GTC
[ENA]
¡û
>W1911741174
QUZZ01000018
Bacteroidota
Taibaiella helva F-4 [QUZZ]
54584
54510
-
Asp
GTC
[ENA]
¡û
>W1911741175
QUZZ01000018
Bacteroidota
Taibaiella helva F-4 [QUZZ]
43719
43645
-
Asp
GTC
[ENA]
¡û
>W1911744283
QVNU01000006
Bacteroidota
Taibaiella koreensis THG-DT86 [QVNU]
389149
389223
+
Asp
GTC
[ENA]
¡û
>W1911744284
QVNU01000006
Bacteroidota
Taibaiella koreensis THG-DT86 [QVNU]
382519
382445
-
Asp
GTC
[ENA]
¡û
>SRA1003195
SRR002326.294659
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
245
169
-
Asp
GTC
[SRA]
>W1810239570
PPSL01000003
Bacteroidota
Flavipsychrobacter stenotrophus RB1R16 [PPSL]
254798
254724
-
Asp
GTC
[ENA]
¡û
>W1810351391
PVEQ01000001
Bacteroidota
Sediminibacterium magnilacihabitans DSM 22423 [PVEQ]
460275
460201
-
Asp
GTC
[ENA]
¡û
>W1810400508
PYGD01000011
Bacteroidota
Taibaiella chishuiensis CGMCC 1.12700 [PYGD]
61013
61087
+
Asp
GTC
[ENA]
¡û
>W1810400509
PYGD01000011
Bacteroidota
Taibaiella chishuiensis CGMCC 1.12700 [PYGD]
103103
103177
+
Asp
GTC
[ENA]
¡û
>W1810400510
PYGD01000011
Bacteroidota
Taibaiella chishuiensis CGMCC 1.12700 [PYGD]
165761
165835
+
Asp
GTC
[ENA]
¡û
>W1810577687
QEOK01000011
Bacteroidota
Filimonas sp. YR581 [QEOK]
215176
215250
+
Asp
GTC
[ENA]
¡û
>W1810577690
QEOK01000013
Bacteroidota
Filimonas sp. YR581 [QEOK]
258
184
-
Asp
GTC
[ENA]
¡û
>W1810586428
QFFJ01000001
Bacteroidota
Chitinophaga flava GDMCC 1.1325 [QFFJ]
1808872
1808946
+
Asp
GTC
[ENA]
¡û
>W1810586429
QFFJ01000001
Bacteroidota
Chitinophaga flava GDMCC 1.1325 [QFFJ]
1815899
1815973
+
Asp
GTC
[ENA]
¡û
>W1810586430
QFFJ01000001
Bacteroidota
Chitinophaga flava GDMCC 1.1325 [QFFJ]
1824021
1824095
+
Asp
GTC
[ENA]
¡û
>W1810586431
QFFJ01000001
Bacteroidota
Chitinophaga flava GDMCC 1.1325 [QFFJ]
1877187
1877261
+
Asp
GTC
[ENA]
¡û
>W1810676138
QKLU01000002
Bacteroidota
Pedobacter nutrimenti DSM 27372 [QKLU]
155868
155794
-
Asp
GTC
[ENA]
¡û
>W1810676139
QKLU01000002
Bacteroidota
Pedobacter nutrimenti DSM 27372 [QKLU]
153751
153677
-
Asp
GTC
[ENA]
¡û
>W1810694458
QLMA01000003
Bacteroidota
Chitinophaga dinghuensis DSM 29821 [QLMA]
208942
208868
-
Asp
GTC
[ENA]
¡û
>W1810694459
QLMA01000003
Bacteroidota
Chitinophaga dinghuensis DSM 29821 [QLMA]
165481
165407
-
Asp
GTC
[ENA]
¡û
>W1810694460
QLMA01000003
Bacteroidota
Chitinophaga dinghuensis DSM 29821 [QLMA]
126011
125937
-
Asp
GTC
[ENA]
¡û
>W1810745613
QOWJ01000010
Bacteroidota
Paracnuella aquatica N24 [QOWJ]
37367
37293
-
Asp
GTC
[ENA]
¡û
>W1810745615
QOWJ01000013
Bacteroidota
Paracnuella aquatica N24 [QOWJ]
143117
143191
+
Asp
GTC
[ENA]
¡û
>W1510010435
BBLT01000001
Bacteroidota
Sporocytophaga myxococcoides PG-01 [BBLT]
830021
829945
-
Asp
GTC
[ENA]
¡û
>C161049117
CP012996
Bacteroidota
Pedobacter sp. PACM 27299 PAMC 27299 [CP012996]
319778
319854
+
Asp
GTC
[Ensembl]
¡û
>C161049118
CP012996
Bacteroidota
Pedobacter sp. PACM 27299 PAMC 27299 [CP012996]
319926
320002
+
Asp
GTC
[Ensembl]
¡û
>C161105008
HE796683
Bacteroidota
Fibrella aestuarina BUZ 2 [HE796683]
2859562
2859488
-
Asp
GTC
[Ensembl]
¡û
>W1610612119
LGEL01000019
Bacteroidota
Pedobacter panaciterrae [LGEL]
220806
220880
+
Asp
GTC
[ENA]
¡û
>WENV080069
AATO01003273
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
16
92
+
Asp
GTC
[ENA]
>W1710522144
FNGZ01000004
Bacteroidota
Pedobacter antarcticus [FNGZ]
367159
367083
-
Asp
GTC
[ENA]
¡û
>W1710522145
FNGZ01000004
Bacteroidota
Pedobacter antarcticus [FNGZ]
363964
363890
-
Asp
GTC
[ENA]
¡û
>W1710522174
FNGZ01000016
Bacteroidota
Pedobacter antarcticus [FNGZ]
470
394
-
Asp
GTC
[ENA]
¡û
>W1710528852
FNNO01000001
Bacteroidota
Hydrobacter penzbergensis [FNNO]
326740
326814
+
Asp
GTC
[ENA]
¡û
>W1710583163
FQUO01000024
Bacteroidota
Cnuella takakiae [FQUO]
9439
9515
+
Asp
GTC
[ENA]
¡û
>W1710583165
FQUO01000028
Bacteroidota
Cnuella takakiae [FQUO]
213
137
-
Asp
GTC
[ENA]
¡û
>W1710601078
FUWZ01000002
Bacteroidota
Chitinophaga eiseniae [FUWZ]
33688
33764
+
Asp
GTC
[ENA]
¡û
>W1710601079
FUWZ01000002
Bacteroidota
Chitinophaga eiseniae [FUWZ]
85764
85840
+
Asp
GTC
[ENA]
¡û
>W1710601107
FUWZ01000005
Bacteroidota
Chitinophaga eiseniae [FUWZ]
551
475
-
Asp
GTC
[ENA]
¡û
>W1710606351
FWXT01000001
Bacteroidota
Pedobacter africanus [FWXT]
2300710
2300634
-
Asp
GTC
[ENA]
¡û
>W1710733625
LGEL01000019
Bacteroidota
Pedobacter panaciterrae [LGEL]
220806
220880
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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